Related references
Note: Only part of the references are listed.Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Gemma Henderson et al.
SCIENTIFIC REPORTS (2015)
Molecular analysis of the microbiota in hard feces from healthy rabbits (Oryctolagus cuniculus) medicated with long term oral meloxicam
David Eshar et al.
BMC VETERINARY RESEARCH (2014)
Analysis of the Gut Microbiota by High-Throughput Sequencing of the V5-V6 Regions of the 16S rRNA Gene in Donkey
Xinfeng Liu et al.
CURRENT MICROBIOLOGY (2014)
Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China
Zhi Peng Li et al.
BMC MICROBIOLOGY (2013)
The core faecal bacterial microbiome of Irish Thoroughbred racehorses
M. M. O' Donnell et al.
LETTERS IN APPLIED MICROBIOLOGY (2013)
The Microbial Community in the Feces of the White Rhinoceros (Ceratotherium simum) as Determined by Barcoded Pyrosequencing Analysis
Gaorui Bian et al.
PLOS ONE (2013)
Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities
Gemma Henderson et al.
PLOS ONE (2013)
Identification of a Core Bacterial Community within the Large Intestine of the Horse
Kirsty Dougal et al.
PLOS ONE (2013)
The Gut Bacterial Community of Mammals from Marine and Terrestrial Habitats
Tiffanie M. Nelson et al.
PLOS ONE (2013)
Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing
Christopher J. Barker et al.
VETERINARY MICROBIOLOGY (2013)
Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle
Kristen L. Reti et al.
GUT PATHOGENS (2013)
Insight into the bacterial gut microbiome of the North American moose (Alces alces)
Suzanne L. Ishaq et al.
BMC MICROBIOLOGY (2012)
Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis
Samantha M. Steelman et al.
BMC VETERINARY RESEARCH (2012)
A comparison of the microbiome and the metabolome of different regions of the equine hindgut
Kirsty Dougal et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons
Megan L. Shepherd et al.
FEMS MICROBIOLOGY LETTERS (2012)
Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities
Jae-Hyung Ahn et al.
JOURNAL OF MICROBIOLOGY (2012)
Bacterial Diversity in the Cecum of the World's Largest Living Rodent (Hydrochoerus hydrochaeris)
M. Alexandra Garcia-Amado et al.
MICROBIAL ECOLOGY (2012)
Composition and Similarity of Bovine Rumen Microbiota across Individual Animals
Elie Jami et al.
PLOS ONE (2012)
Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene
Marcio C. Costa et al.
PLOS ONE (2012)
Comparison of the Fecal Microbiota in Feral and Domestic Goats
Kassandra M. De Jesus-Laboy et al.
GENES (2012)
Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations
Orin C. Shanks et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification
David Berry et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Comparative fecal metagenomics unveils unique functional capacity of the swine gut
Regina Lamendella et al.
BMC MICROBIOLOGY (2011)
Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironments
Minseok Kim et al.
FOLIA MICROBIOLOGICA (2011)
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Brian J. Haas et al.
GENOME RESEARCH (2011)
Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon
Daniel Aguirre de Carcer et al.
ISME JOURNAL (2011)
Comparative Analysis of Korean Human Gut Microbiota by Barcoded Pyrosequencing
Young-Do Nam et al.
PLOS ONE (2011)
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Brian D. Muegge et al.
SCIENCE (2011)
Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries)
Cai-Xia Pei et al.
ANAEROBE (2010)
ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle
David G. Welkie et al.
ANAEROBE (2010)
Evolutionary adaptations of ruminants and their potential relevance for modern production systems
M. Clauss et al.
ANIMAL (2010)
PyNAST: a flexible tool for aligning sequences to a template alignment
J. Gregory Caporaso et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
T. R. Callaway et al.
JOURNAL OF ANIMAL SCIENCE (2010)
Rumen Bacterial Diversity Dynamics Associated with Changing from Bermudagrass Hay to Grazed Winter Wheat Diets
Dipti W. Pitta et al.
MICROBIAL ECOLOGY (2010)
Microbiota and SCFA in Lean and Overweight Healthy Subjects
Andreas Schwiertz et al.
OBESITY (2010)
Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities
Suleyman Yildirim et al.
PLOS ONE (2010)
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
Carlotta De Filippo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine
Marcus J. Claesson et al.
PLOS ONE (2009)
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
Jennifer M. Brulc et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Phylogenetic analysis of hindgut microbiota in Hokkaido native horses compared to light horses
Hidehisa Yamano et al.
ANIMAL SCIENCE JOURNAL (2008)
Structure of the archaeal community of the rumen
Peter H. Janssen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
Scot E. Dowd et al.
BMC MICROBIOLOGY (2008)
Worlds within worlds: evolution of the vertebrate gut microbiota
Ruth E. Ley et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Evolution of mammals and their gut microbes
Ruth E. Ley et al.
SCIENCE (2008)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Hindgut microbes, fermentation and their seasonal variations in Hokkaido native horses compared to light horses
Y Kobayashi et al.
ECOLOGICAL RESEARCH (2006)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Obesity alters gut microbial ecology
RE Ley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
JR Cole et al.
NUCLEIC ACIDS RESEARCH (2005)
Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us
PF Kemp et al.
FEMS MICROBIOLOGY ECOLOGY (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Share Paper
