4.3 Article

Evolutionary history of LTR-retrotransposons among 20 Drosophila species

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to the Mariner Family within Drosophila

Gabriel Luz Wallau et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Evolutionary Biology

Do larger genomes contain more diverse transposable elements?

Tyler A. Elliott et al.

BMC EVOLUTIONARY BIOLOGY (2015)

Article Biology

What's in a genome? The C-value enigma and the evolution of eukaryotic genome content

Tyler A. Elliott et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Genetics & Heredity

Repbase Update, a database of repetitive elements in eukaryotic genomes

Weidong Bao et al.

MOBILE DNA (2015)

Article Biotechnology & Applied Microbiology

Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus

Gabriel Luz Wallau et al.

BMC GENOMICS (2014)

Article Evolutionary Biology

A New Genome-Wide Method to Track Horizontally Transferred Sequences: Application to Drosophila

Laurent Modolo et al.

GENOME BIOLOGY AND EVOLUTION (2014)

Article Genetics & Heredity

One code to find them all: a perl tool to conveniently parse RepeatMasker output files

Marc Bailly-Bechet et al.

MOBILE DNA (2014)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

Vanessa Zanni et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Virology

tirant, a Newly Discovered Active Endogenous Retrovirus in Drosophila simulans

Abdou Akkouche et al.

JOURNAL OF VIROLOGY (2012)

Article Biochemical Research Methods

ProtTest 3: fast selection of best-fit models of protein evolution

Diego Darriba et al.

BIOINFORMATICS (2011)

Article Evolutionary Biology

BEL/Pao retrotransposons in metazoan genomes

Nicole de la Chaux et al.

BMC EVOLUTIONARY BIOLOGY (2011)

Article Genetics & Heredity

The copia retrotransposon and horizontal transfer in Drosophila willistoni

P. M. Rubin et al.

GENETICS RESEARCH (2011)

Article Multidisciplinary Sciences

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez et al.

PLOS ONE (2011)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

Manolo Gouy et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Review Plant Sciences

A triptych of the evolution of plant transposable elements

Maud I. Tenaillon et al.

TRENDS IN PLANT SCIENCE (2010)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Article Evolutionary Biology

Evolutionary dynamics of the LTR retrotransposons roo and rooA inferred from twelve complete Drosophila genomes

Nicole de la Chaux et al.

BMC EVOLUTIONARY BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes

Carolina Bartolome et al.

GENOME BIOLOGY (2009)

Article Biochemical Research Methods

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

David Ellinghaus et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Multiple invasions of Errantivirus in the genus Drosophila

A. Ludwig et al.

INSECT MOLECULAR BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

Hsiao-Pei Yang et al.

GENOME BIOLOGY (2008)

Article Multidisciplinary Sciences

Evolution of genes and genomes on the Drosophila phylogeny

Andrew G. Clark et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Molecular characterization and genomic distribution of Isis: a new retrotransposon of Drosophila buzzatii

M. P. Garcia Guerreiro et al.

MOLECULAR GENETICS AND GENOMICS (2007)

Article Biochemistry & Molecular Biology

Differences in genome size between closely related species: The Drosophila melanogaster species subgroup

M Boulesteix et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Genetics & Heredity

High rate of horizontal transfer of transposable elements in Drosophila

A Sánchez-Gracia et al.

TRENDS IN GENETICS (2005)

Article Biochemical Research Methods

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

RC Edgar

BMC BIOINFORMATICS (2004)

Review Biotechnology & Applied Microbiology

The diversity of LTR retrotransposons

ER Havecker et al.

GENOME BIOLOGY (2004)

Article Virology

Life cycle of an endogenous retrovirus, ZAM in Drosophila melanogaster

P Leblanc et al.

JOURNAL OF VIROLOGY (2000)