4.7 Article

A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis

Journal

AMERICAN JOURNAL OF HUMAN GENETICS
Volume 100, Issue 1, Pages 64-74

Publisher

CELL PRESS
DOI: 10.1016/j.ajhg.2016.11.013

Keywords

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Funding

  1. Institute de Salud Carlos III (ISCIII), Spain, through the RETICS Program [RD12/0009/0004]
  2. Ramon y Cajal program of the Spanish Ministry of Economy and Competitiveness [RYC-2014-16458]
  3. United States National Institute of Arthritis and Musculoskeletal and Skin Diseases [U54AR057319]
  4. National Center for Research Resources [U54 RR019497]
  5. Office of Rare Diseases Research
  6. National Center for Advancing Translational Science
  7. Research into Ageing
  8. Wellcome Trust
  9. National Institute for Health Research
  10. Medical Research Council
  11. Ann Wilks Memorial Fund
  12. National Institute for Health Research (NIHR)
  13. MRC [G1001518, MR/L01629X/1, MR/N011775/1] Funding Source: UKRI
  14. Fight for Sight [24PMR13] Funding Source: researchfish
  15. Medical Research Council [MR/L01629X/1, G1001518] Funding Source: researchfish
  16. National Institute for Health Research [NIHR-CS-012-016] Funding Source: researchfish

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Giant cell arteritis (GCA) is the most common form of vasculitis in individuals older than SO years in Western countries. To shed light onto the genetic background influencing susceptibility for GCA, we performed a genome-wide association screening in a well-powered study cohort. After imputation, 1,844,133 genetic variants were analyzed in 2,134 case subjects and 9,125 unaffected individuals from ten independent populations of European ancestry. Our data confirmed HLA class II as the strongest associated region (independent signals: rs9268905, p = 1.94 x 10(-54), per-allele OR = 1.79; and rs9275592, p = 1.14 x 10(-4), OR = 2.08). Additionally, PLG and P4HA2 were identified as GCA risk genes at the genome-wide level of significance (rs4252134, p = 1.23 x 10(-10), OR = 1.28; and rs128738, p = 4.60 x 10(-9), OR = 1.32, respectively). Interestingly, we observed that the association peaks overlapped with different regulatory elements related to cell types and tissues involved in the pathophysiology of GCA. PLG and P4HA2 are involved in vascular remodelling and angiogenesis, suggesting a high relevance of these processes for the pathogenic mechanisms underlying this type of vasculitis.

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