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The Natural Biotic Environment of Caenorhabditis elegans

Journal

GENETICS
Volume 206, Issue 1, Pages 55-86

Publisher

GENETICS SOCIETY AMERICA
DOI: 10.1534/genetics.116.195511

Keywords

WormBook; Caenorhabditis elegans; natural ecology; microbiome; pathogens; competition

Funding

  1. Centre National de la Recherche Scientifique
  2. Ecole Norma Superieure
  3. Fondation pour la Recherche Medicale [Equipe FRM DEQ20150331704]
  4. Agence Nationale pour la Recherche [ANR-14-CE10-0003-02]
  5. German Science Foundation within the Collaborative Research Center 1182 on the origin and function of metaorganisms
  6. Agence Nationale de la Recherche (ANR) [ANR-14-CE10-0003] Funding Source: Agence Nationale de la Recherche (ANR)

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Organisms evolve in response to their natural environment. Consideration of natural ecological parameters are thus of key importance for our understanding of an organism's biology. Curiously, the natural ecology of the model species Caenorhabditis elegans has long been neglected, even though this nematode has become one of the most intensively studied models in biological research. This lack of interest changed similar to 10 yr ago. Since then, an increasing number of studies have focused on the nematode's natural ecology. Yet many unknowns still remain. Here, we provide an overview of the currently available information on the natural environment of C. elegans. We focus on the biotic environment, which is usually less predictable and thus can create high selective constraints that are likely to have had a strong impact on C. elegans evolution. This nematode is particularly abundant in microbe-rich environments, especially rotting plant matter such as decomposing fruits and stems. In this environment, it is part of a complex interaction network, which is particularly shaped by a species-rich microbial community. These microbes can be food, part of a beneficial gut microbiome, parasites and pathogens, and possibly competitors. C. elegans is additionally confronted with predators; it interacts with vector organisms that facilitate dispersal to new habitats, and also with competitors for similar food environments, including competitors from congeneric and also the same species. Full appreciation of this nematode's biology warrants further exploration of its natural environment and subsequent integration of this information into the well-established laboratory-based research approaches.

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