Related references
Note: Only part of the references are listed.PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
Jinpu Jin et al.
NUCLEIC ACIDS RESEARCH (2017)
Analysis of weighted co-regulatory networks in maize provides insights into new genes and regulatory mechanisms related to inositol phosphate metabolism
Shaojun Zhang et al.
BMC GENOMICS (2016)
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
Ronan C. O'Malley et al.
CELL (2016)
Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors
Erin E. Sparks et al.
DEVELOPMENTAL CELL (2016)
Differential Contribution of Malic Enzymes during Soybean and Castor Seeds Maturation
Mariel Claudia Gerrard Wheeler et al.
PLOS ONE (2016)
Regulatory network analysis reveals novel regulators of seed desiccation tolerance in Arabidopsis thaliana
Sandra Isabel Gonzalez-Morales et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis
Ying Ni et al.
FRONTIERS IN PLANT SCIENCE (2016)
Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines
Neelam R. Redekar et al.
BMC GENOMICS (2015)
Metabolite Profiling of Soybean Seed Extracts from Near-lsogenic Low and Normal Phytate Lines Using Orthogonal Separation Strategies
Judith Jervis et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2015)
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
Jinpu Jin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages during Embryo Development
John Danzer et al.
PLANT PHYSIOLOGY (2015)
An Arabidopsis gene regulatory network for secondary cell wall synthesis
M. Taylor-Teeples et al.
NATURE (2015)
Supervised, semi-supervised and unsupervised inference of gene regulatory networks
Stefan R. Maetschke et al.
BRIEFINGS IN BIOINFORMATICS (2014)
Overexpression of the activated form of the AtAREB1 gene (AtAREB1ΔQT) improves soybean responses to water deficit
J. P. Leite et al.
GENETICS AND MOLECULAR RESEARCH (2014)
Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters
Wusheng Liu et al.
PLANT BIOTECHNOLOGY JOURNAL (2014)
Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics
Stephen A. Ramsey et al.
PLoS Computational Biology (2014)
Current perspectives on the hormonal control of seed development in Arabidopsis and maize: a focus on auxin
Antonella Locascio et al.
FRONTIERS IN PLANT SCIENCE (2014)
Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data
Mingzhu Zhu et al.
BMC BIOINFORMATICS (2013)
Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis
Xiaodong Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
TIGRESS: Trustful Inference of Gene REgulation using Stability Selection
Anne-Claire Haury et al.
BMC SYSTEMS BIOLOGY (2012)
Wisdom of crowds for robust gene network inference
Daniel Marbach et al.
NATURE METHODS (2012)
Gene-Sharing Networks Reveal Organizing Principles of Transcriptomes in Arabidopsis and Other Multicellular Organisms
Song Li et al.
PLANT CELL (2012)
D-myo-Inositol-3-Phosphate Affects Phosphatidylinositol-Mediated Endomembrane Function in Arabidopsis and Is Essential for Auxin-Regulated Embryogenesis
Yu Luo et al.
PLANT CELL (2011)
A Soybean Dual-Specificity Kinase, GmSARK, and Its Arabidopsis Homolog, AtSARK, Regulate Leaf Senescence through Synergistic Actions of Auxin and Ethylene
Fan Xu et al.
PLANT PHYSIOLOGY (2011)
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions
George W. Bassel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Inositol Metabolism in Developing Seed of Low and Normal Phytic Acid Soybean Lines
Daniel W. Israel et al.
CROP SCIENCE (2011)
myo-Inositol-1-phosphate Synthase Is Required for Polar Auxin Transport and Organ Development
Hao Chen et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Myo-inositol abolishes salicylic acid-dependent cell death and pathogen defence responses triggered by peroxisomal hydrogen peroxide
Sejir Chaouch et al.
NEW PHYTOLOGIST (2010)
The Arabidopsis thaliana Myo-Inositol 1-Phosphate Synthase1 Gene Is Required for Myo-inositol Synthesis and Suppression of Cell Death
Janet L. Donahue et al.
PLANT CELL (2010)
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
Van Anh Huynh-Thu et al.
PLOS ONE (2010)
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors
Brandon H. Le et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
The Arabidopsis ATP-binding Cassette Protein AtMRP5/AtABCC5 Is a High Affinity Inositol Hexakisphosphate Transporter Involved in Guard Cell Signaling and Phytate Storage
Reka Nagy et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Crosstalks between Myo-Inositol Metabolism, Programmed Cell Death and Basal Immunity in Arabidopsis
Ping Hong Meng et al.
PLOS ONE (2009)
Genetic Basis of the Low-Phytate Trait in the Soybean Line CX1834
M. A. Saghai Maroof et al.
CROP SCIENCE (2009)
Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds
Xiu-Hong Xu et al.
THEORETICAL AND APPLIED GENETICS (2009)
A Small Subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB Genes: A Link to HOOKLESS1-Mediated Signal Transduction during Early Morphogenesis
Aya Hamaguchi et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2008)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Embryo-specific silencing of a transporter reduces phytic acid content of maize and soybean seeds
Jinrui Shi et al.
NATURE BIOTECHNOLOGY (2007)
Using genomics to study legume seed development
Brandon H. Le et al.
PLANT PHYSIOLOGY (2007)
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
Jeremiah J. Faith et al.
PLOS BIOLOGY (2007)
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
AA Margolin et al.
BMC BIOINFORMATICS (2006)
Generation of phytate-free seeds in Arabidopsis through disruption of inositol polyphosphate kinases
J Stevenson-Paulik et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The maize low-phytic acid 3 encodes a myo-inositol kinase that plays a role in phytic acid biosynthesis in developing seeds
JR Shi et al.
PLANT JOURNAL (2005)
An empirical Bayes approach to inferring large-scale gene association networks
J Schäfer et al.
BIOINFORMATICS (2005)
A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
J Schafer et al.
STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2005)
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
E Segal et al.
NATURE GENETICS (2003)
The maize low-phytic acid mutant 1pa2 is caused by mutation in an inositol phosphate kinase gene
JR Shi et al.
PLANT PHYSIOLOGY (2003)
Biochemical and molecular characterization of a mutation that confers a decreased raffinosaccharide and phytic acid phenotype on soybean seeds
WD Hitz et al.
PLANT PHYSIOLOGY (2002)
Expression of D-myo-inositol-3-phosphate synthase in soybean.: Implications for phytic acid biosynthesis
CE Hegeman et al.
PLANT PHYSIOLOGY (2001)
Isolation of high seed inorganic P, low-phytate soybean mutants
JR Wilcox et al.
CROP SCIENCE (2000)
Inositol signaling and plant growth
JM Stevenson et al.
TRENDS IN PLANT SCIENCE (2000)
Analysis of large-scale gene expression data
G Sherlock
CURRENT OPINION IN IMMUNOLOGY (2000)
Identification and expression of isoflavone synthase, the key enzyme for biosynthesis of isoflavones in legumes
W Jung et al.
NATURE BIOTECHNOLOGY (2000)
myo-inositol metabolism in plants
FA Loewus et al.
PLANT SCIENCE (2000)
Share Paper
