Related references
Note: Only part of the references are listed.Ensembl Genomes 2016: more genomes, more complexity
Paul Julian Kersey et al.
NUCLEIC ACIDS RESEARCH (2016)
ProtPhylo: identification of protein-phenotype and protein-protein functional associations via phylogenetic profiling
Yiming Cheng et al.
NUCLEIC ACIDS RESEARCH (2015)
Phylogenetic Profiling: How Much Input Data Is Enough?
Nives Skunca et al.
PLOS ONE (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data
Marc Lohse et al.
PLANT CELL AND ENVIRONMENT (2014)
Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information
Paula Korkuc et al.
PLANT PHYSIOLOGY (2014)
Network analysis for gene discovery in plant-specialized metabolism
Yasuhiro Higashi et al.
PLANT CELL AND ENVIRONMENT (2013)
Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships
Nives Skunca et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins
Shaul Ashkenazi et al.
BIOINFORMATICS (2012)
The Path from β-Carotene to Carlactone, a Strigolactone-Like Plant Hormone
Adrian Alder et al.
SCIENCE (2012)
From hormones to secondary metabolism: the emergence of metabolic gene clusters in plants
Hoi Yee Chu et al.
PLANT JOURNAL (2011)
Ensembl BioMarts: a hub for data retrieval across taxonomic space
Rhoda J. Kinsella et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)
Predicting gene function using hierarchical multi-label decision tree ensembles
Leander Schietgat et al.
BMC BIOINFORMATICS (2010)
Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast
Dirk Walther et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2010)
Gene Clusters for Secondary Metabolic Pathways: An Emerging Theme in Plant Biology
Anne Osbourn
PLANT PHYSIOLOGY (2010)
AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M. Brandao et al.
BMC BIOINFORMATICS (2009)
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Albert J. Vilella et al.
GENOME RESEARCH (2009)
Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis
Daniel J. Kliebenstein
PLANT CELL (2009)
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles
Pawel Durek et al.
BMC SYSTEMS BIOLOGY (2008)
Predicting protein function with hierarchical phylogenetic profiles: The Gene3D phylo-tuner method applied to eukaryotic Genomes
Juan A. G. Ranea et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment
Raja Jothi et al.
BMC BIOINFORMATICS (2007)
Enzyme promiscuity: evolutionary and mechanistic aspects
Olga Khersonsky et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2006)
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
N Schauer et al.
NATURE BIOTECHNOLOGY (2006)
Identification of fungal sphingolipid C9-methyltransferases by phylogenetic profiling
P Ternes et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships
Y Kim et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
The secondary metabolism of Arabidopsis thaliana:: growing like a weed
JC D'Auria et al.
CURRENT OPINION IN PLANT BIOLOGY (2005)
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis:: functional and evolutionary implications
CMM Gachon et al.
PLANT MOLECULAR BIOLOGY (2005)
Plant cell factories in the post-genomic era:: new ways to produce designer secondary metabolites
KM Oksman-Caldentey et al.
TRENDS IN PLANT SCIENCE (2004)
A domain interaction map based on phylogenetic profiling
P Pagel et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service
DJ Craigon et al.
NUCLEIC ACIDS RESEARCH (2004)
How well is enzyme function conserved as a function of pairwise sequence identity?
WD Tian et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Potential therapeutic applications of some antinutritional plant secondary metabolites
B Singh et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2003)
Enzyme function less conserved than anticipated
B Rost
JOURNAL OF MOLECULAR BIOLOGY (2002)
Engineering secondary metabolite production in plants
R Verpoorte et al.
CURRENT OPINION IN BIOTECHNOLOGY (2002)
Genetics and biochemistry of secondary metabolites in plants: an evolutionary perspective
E Pichersky et al.
TRENDS IN PLANT SCIENCE (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
