4.6 Article

Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex

Related references

Note: Only part of the references are listed.
Article Evolutionary Biology

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution

Xuhua Xia

JOURNAL OF HEREDITY (2017)

Review Microbiology

The social Life of Aeromonas through Biofilm and Quorum Sensing Systems

Emilie Talagrand-Reboul et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Microbiology

Evolutionary Roots and Diversification of the Genus Aeromonas

Ariadna Sanglas et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Microbiology

Delineation of Taxonomic Species within Complex of Species: Aeromonas media and Related Species as a Test Case

Emilie Talagrand-Reboul et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Characterization and mechanism of anti-Aeromonas salmonicida activity of a marine probiotic strain, Bacillus velezensis V4

Xi-Yan Gao et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)

Review Chemistry, Analytical

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

Leighton Pritchard et al.

ANALYTICAL METHODS (2016)

Article Microbiology

Pan-genome analysis of Aeromonas hydrophila, Aeromonas veronii and Aeromonas caviae indicates phylogenomic diversity and greater pathogenic potential for Aeromonas hydrophila

Sandeep Ghatak et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

PHASTER: a better, faster version of the PHAST phage search tool

David Arndt et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Genetics & Heredity

Meeting report: GenBank microbial genomic taxonomy workshop (12-13 May, 2015)

Scott Federhen et al.

STANDARDS IN GENOMIC SCIENCES (2016)

Article Multidisciplinary Sciences

AMAS: a fast tool for alignment manipulation and computing of summary statistics

Marek L. Borowiec

PEERJ (2016)

Article Multidisciplinary Sciences

Identification of protein secretion systems in bacterial genomes

Sophie S. Abby et al.

SCIENTIFIC REPORTS (2016)

Article Microbiology

Bacterial Secretion Systems: An Overview

Erin R. Green et al.

MICROBIOLOGY SPECTRUM (2016)

Article Biochemistry & Molecular Biology

Inside the Pan-genome - Methods and Software Overview

Luis Carlos Guimaraes et al.

CURRENT GENOMICS (2015)

Review Microbiology

Secretion systems in Gram-negative bacteria: structural and mechanistic insights

Tiago R. D. Costa et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Review Microbiology

Insight into the mobilome of Aeromonas strains

Marta Piotrowska et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Entericidin Is Required for a Probiotic Treatment (Enterobacter sp Strain C6-6) To Protect Trout from Cold-Water Disease Challenge

Carla B. Schubiger et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Review Chemistry, Medicinal

Control of Biofilms with the Fatty Acid Signaling Molecule cis-2-Decenoic Acid

Claudia N. H. Marques et al.

PHARMACEUTICALS (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Review Microbiology

A View to a Kill: The Bacterial Type VI Secretion System

Brian T. Ho et al.

CELL HOST & MICROBE (2014)

Review Biotechnology & Applied Microbiology

Aeromonas salmonicida subsp salmonicida in the light of its type-three secretion system

Philippe Vanden Bergh et al.

MICROBIAL BIOTECHNOLOGY (2014)

Article Microbiology

The Comprehensive Antibiotic Resistance Database

Andrew G. McArthur et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)

Article Biotechnology & Applied Microbiology

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

Bruno Contreras-Moreira et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Probiotic treatment by indigenous bacteria decreases mortality without disturbing the natural microbiota of Salvelinus fontinalis

Sebastien Boutin et al.

CANADIAN JOURNAL OF MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Biochemistry & Molecular Biology

Health effects of dietary phospholipids

Daniela Kuellenberg et al.

LIPIDS IN HEALTH AND DISEASE (2012)

Article Biochemical Research Methods

NIH Image to ImageJ: 25 years of image analysis

Caroline A. Schneider et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt et al.

PLOS ONE (2012)

Review Biology

Type V secretion: mechanism(s) of autotransport through the bacterial outer membrane

Jack C. Leo et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

Article Biotechnology & Applied Microbiology

Determination of Microbial Diversity of Aeromonas Strains on the Basis of Multilocus Sequence Typing, Phenotype, and Presence of Putative Virulence Genes

Maria Elena Martino et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea

Yucheng Shao et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Environmental Sciences

The impact of warming on the appearance of furunculosis in fish of the James Bay region, Quebec, Canada

Benita Tam et al.

REGIONAL ENVIRONMENTAL CHANGE (2011)

Article Multidisciplinary Sciences

Microtiter Dish Biofilm Formation Assay

George A. O'Toole

JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2011)

Review Microbiology

The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection

J. Michael Janda et al.

CLINICAL MICROBIOLOGY REVIEWS (2010)

Article Biochemistry & Molecular Biology

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

Federico Abascal et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

Reordering contigs of draft genomes using the Mauve Aligner

Anna I. Rissman et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Review Biochemical Research Methods

Antibiotics and antibiotic resistance in water environments

Fernando Baquero et al.

CURRENT OPINION IN BIOTECHNOLOGY (2008)

Article Computer Science, Interdisciplinary Applications

The ade4 package: Implementing the duality diagram for ecologists

Stephane Dray et al.

JOURNAL OF STATISTICAL SOFTWARE (2007)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Multidisciplinary Sciences

Genomic insights that advance the species definition for prokaryotes

KT Konstantinidis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)