Related references
Note: Only part of the references are listed.Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes
Anna Heintz-Buschart et al.
NATURE MICROBIOLOGY (2017)
The gut microbiota and host health: a new clinical frontier
Julian R. Marchesi et al.
GUT (2016)
2016 update of the PRIDE database and its related tools
Juan Antonio Vizcaino et al.
NUCLEIC ACIDS RESEARCH (2016)
Effect of Dietary Oxalate on the Gut Microbiota of the Mammalian Herbivore Neotoma albigula
Aaron W. Miller et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset
Claire Ramus et al.
JOURNAL OF PROTEOMICS (2016)
Diversity and ecology of oxalotrophic bacteria
Vincent Herve et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2016)
The impact of sequence database choice on metaproteomic results in gut microbiota studies
Alessandro Tanca et al.
MICROBIOME (2016)
A Mechanistic Beta-Binomial Probability Model for mRNA Sequencing Data
Gregory R. Smith et al.
PLOS ONE (2016)
Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design
Debby Laukens et al.
FEMS MICROBIOLOGY REVIEWS (2016)
Oxalobacter formigenes Colonization and Oxalate Dynamics in a Mouse Model
Xingsheng Li et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Error filtering, pair assembly and error correction for next-generation sequencing reads
Robert C. Edgar et al.
BIOINFORMATICS (2015)
How informative is the mouse for human gut microbiota research?
Thi Loan Anh Nguyen et al.
DISEASE MODELS & MECHANISMS (2015)
Effect of Oxygen Stress on Growth and Survival of Clostridium perfringens, Campylobacter jejuni, and Listeria monocytogenes under Different Storage Conditions
Hamzah Al-Qadiri et al.
JOURNAL OF FOOD PROTECTION (2015)
Targeted Proteomic Analyses of Nasal Lavage Fluid in Persulfate-Challenged Hairdressers with Bleaching Powder-Associated Rhinitis
Harriet Mortstedt et al.
JOURNAL OF PROTEOME RESEARCH (2015)
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
Tauno Metsalu et al.
NUCLEIC ACIDS RESEARCH (2015)
Enrichment or depletion? The impact of stool pretreatment on metaproteomic characterization of the human gut microbiota
Alessandro Tanca et al.
PROTEOMICS (2015)
The Unipept metaproteomics analysis pipeline
Bart Mesuere et al.
PROTEOMICS (2015)
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
Weili Xiong et al.
PROTEOMICS (2015)
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
Francesco Asnicar et al.
PEERJ (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
UniProt: a hub for protein information
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2015)
The Gut Microbiota of Wild Mice
Laura Weldon et al.
PLOS ONE (2015)
A straightforward and efficient analytical pipeline for metaproteome characterization
Alessandro Tanca et al.
MICROBIOME (2014)
Role of glutamate metabolism in bacterial responses towards acid and other stresses
C. Feehily et al.
JOURNAL OF APPLIED MICROBIOLOGY (2013)
Bacterial Community Mapping of the Mouse Gastrointestinal Tract
Shenghua Gu et al.
PLOS ONE (2013)
Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome
Alessandro Tanca et al.
PROTEOMICS (2013)
The genetic composition of Oxalobacter formigenes and its relationship to colonization and calcium oxalate stone disease
John Knight et al.
UROLITHIASIS (2013)
An accurate paired sample test for count data
Thang V. Pham et al.
BIOINFORMATICS (2012)
Metaproteome Analysis and Molecular Genetics of Rat Intestinal Microbiota Reveals Section and Localization Resolved Species Distribution and Enzymatic Functionalities
Sven-Bastiaan Haange et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Faecal and caecal microbiota profiles of mice do not cluster in the same way
Wanyong Pang et al.
LABORATORY ANIMALS (2012)
Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids
Xiaoli Shi et al.
NATURE COMMUNICATIONS (2012)
Assessing Significance in High-Throughput Experiments by Sequential Goodness of Fit and q-Value Estimation
Antonio Carvajal-Rodriguez et al.
PLOS ONE (2011)
Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins
Ying Zhang et al.
ANALYTICAL CHEMISTRY (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
FragGeneScan: predicting genes in short and error-prone reads
Mina Rho et al.
NUCLEIC ACIDS RESEARCH (2010)
Direct sequencing of the human microbiome readily reveals community differences
Justin Kuczynski et al.
GENOME BIOLOGY (2010)
A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
Antonio Carvajal-Rodriguez et al.
BMC BIOINFORMATICS (2009)
Universal sample preparation method for proteome analysis
Jacek R. Wisniewski et al.
NATURE METHODS (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Thioredoxin reductase is essential for Thiol/Disulfide redox control and oxidative stress survival of the anaerobe Bacteroides fragilis
Edson R. Rocha et al.
JOURNAL OF BACTERIOLOGY (2007)
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
Boris Zybailov et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Oxalate production by Sclerotinia sclerotiorum deregulates guard cells during infection
RL Guimaraes et al.
PLANT PHYSIOLOGY (2004)