4.8 Article

Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra E. Kornienko et al.

GENOME BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Systematic Discovery of Xist RNA Binding Proteins

Ci Chu et al.

Article Developmental Biology

Imprinted expression in cystic embryoid bodies shows an embryonic and not an extra-embryonic pattern

Tomasz M. Kulinski et al.

DEVELOPMENTAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

The landscape of genomic imprinting across diverse adult human tissues

Yael Baran et al.

GENOME RESEARCH (2015)

Article Multidisciplinary Sciences

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3

Colleen A. McHugh et al.

NATURE (2015)

Article Multidisciplinary Sciences

Integrative analysis of haplotype-resolved epigenomes across human tissues

Danny Leung et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation

Dimos Gaidatzis et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

Allelome.PRO, a pipeline to define allele-specific genomic features from high-throughput sequencing data

Daniel Andergassen et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Cell Biology

Noncanonical Genomic Imprinting Effects in Offspring

Paul J. Bonthuis et al.

CELL REPORTS (2015)

Article Genetics & Heredity

A Survey of Imprinted Gene Expression in Mouse Trophoblast Stem Cells

J. Mauro Calabrese et al.

G3-GENES GENOMES GENETICS (2015)

Article Genetics & Heredity

Escape from X Inactivation Varies in Mouse Tissues

Joel B. Berletch et al.

PLOS GENETICS (2015)

Article Biotechnology & Applied Microbiology

Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression

Ruslan Strogantsev et al.

GENOME BIOLOGY (2015)

Article Developmental Biology

Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta

Elizabeth H. Finn et al.

DEVELOPMENTAL BIOLOGY (2014)

Review Ecology

Post-natal imprinting: evidence from marsupials

J. M. Stringer et al.

HEREDITY (2014)

Article Multidisciplinary Sciences

The evolution of lncRNA repertoires and expression patterns in tetrapods

Anamaria Necsulea et al.

NATURE (2014)

Review Genetics & Heredity

The role of genomic imprinting in biology and disease: an expanding view

Jo Peters

NATURE REVIEWS GENETICS (2014)

Review Genetics & Heredity

Transcriptional enhancers: from properties to genome-wide predictions

Daria Shlyueva et al.

NATURE REVIEWS GENETICS (2014)

Article Biochemistry & Molecular Biology

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

Ezgi Hacisuleyman et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)

Article Biochemistry & Molecular Biology

RefSeq: an update on mammalian reference sequences

Kim D. Pruitt et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Transcriptome and genome sequencing uncovers functional variation in humans

Tuuli Lappalainen et al.

NATURE (2013)

Article Genetics & Heredity

Genetic Architecture of Skewed X Inactivation in the Laboratory Mouse

John D. Calaway et al.

PLOS GENETICS (2013)

Article Biochemistry & Molecular Biology

A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods

Marc Sultan et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2012)

Article Biochemistry & Molecular Biology

Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation

J. Mauro Calabrese et al.

Article Cell Biology

Mechanisms of long range silencing by imprinted macro non-coding RNAs

Florian M. Pauler et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)

Article Biochemistry & Molecular Biology

Re-investigation and RNA sequencing-based identification of genes with placenta-specific imprinted expression

Hiroaki Okae et al.

HUMAN MOLECULAR GENETICS (2012)

Review Biochemistry & Molecular Biology

A survey of tissue-specific genomic imprinting in mammals

Adam R. Prickett et al.

MOLECULAR GENETICS AND GENOMICS (2012)

Article Multidisciplinary Sciences

Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing

Paulina A. Latos et al.

SCIENCE (2012)

Article Genetics & Heredity

Critical Evaluation of Imprinted Gene Expression by RNA-Seq: A New Perspective

Brian DeVeale et al.

PLOS GENETICS (2012)

Article Genetics & Heredity

A Survey for Novel Imprinted Genes in the Mouse Placenta by mRNA-seq

Xu Wang et al.

GENETICS (2011)

Review Genetics & Heredity

Genes that escape from X inactivation

Joel B. Berletch et al.

HUMAN GENETICS (2011)

Article Multidisciplinary Sciences

Mouse genomic variation and its effect on phenotypes and gene regulation

Thomas M. Keane et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data

Stefan Washietl et al.

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Identification and resolution of artifacts in the interpretation of imprinted gene expression

Charlotte Proudhon et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2010)

Article Multidisciplinary Sciences

Progesterone induces adult mammary stem cell expansion

Purna A. Joshi et al.

NATURE (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Global Survey of Genomic Imprinting by Transcriptome Sequencing

Tomas Babak et al.

CURRENT BIOLOGY (2008)

Article Multidisciplinary Sciences

The ground state of embryonic stem cell self-renewal

Qi-Long Ying et al.

NATURE (2008)

Article Multidisciplinary Sciences

The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

Takashi Nagano et al.

SCIENCE (2008)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)

Article Biochemistry & Molecular Biology

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine

Lei Kong et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Cell Biology

Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

Debora Mancini-DiNardo et al.

GENES & DEVELOPMENT (2006)

Article Biochemical Research Methods

Derivation of mouse embryonic stem cells

Vitezslav Bryja et al.

NATURE PROTOCOLS (2006)

Article Biochemistry & Molecular Biology

The imprinted gene and parent-of-origin effect database now includes parental origin of de novo mutations

Rivka L. Glaser et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Genetics & Heredity

Identification of a cluster of X-linked imprinted genes in mice

AS Raefski et al.

NATURE GENETICS (2005)

Article Genetics & Heredity

Genome imprinting regulated by the mouse Polycomb group protein Eed

J Mager et al.

NATURE GENETICS (2003)

Article Multidisciplinary Sciences

The non-coding Air RNA is required for silencing autosomal imprinted genes

F Sleutels et al.

NATURE (2002)