4.6 Article

OpenMM 7: Rapid development of high performance algorithms for molecular dynamics

Journal

PLOS COMPUTATIONAL BIOLOGY
Volume 13, Issue 7, Pages -

Publisher

PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pcbi.1005659

Keywords

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Funding

  1. Simbios via the National Institutes of Health Roadmap for Medical Research [U54 GM072970]
  2. National Institutes of Health [R01-GM062868]
  3. Sloan Kettering Institute, National Science Foundation [P30 08748]
  4. Starr Foundation [I8-A8-058]
  5. intramural research program of the National Heart, Lung and Blood Institute
  6. National Science Foundation Graduate Research Fellowship Program [DGE-1257284]
  7. Tri-Institutional PhD Program in Chemical Biology of Memorial Sloan Kettering Cancer Center

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OpenMM is a molecular dynamics simulation toolkit with a unique focus on extensibility. It allows users to easily add new features, including forces with novel functional forms, new integration algorithms, and new simulation protocols. Those features automatically work on all supported hardware types (including both CPUs and GPUs) and perform well on all of them. In many cases they require minimal coding, just a mathematical description of the desired function. They also require no modification to OpenMM itself and can be distributed independently of OpenMM. This makes it an ideal tool for researchers developing new simulation methods, and also allows those new methods to be immediately available to the larger community.

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