4.6 Article

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity

Related references

Note: Only part of the references are listed.
Review Immunology

Mass spectrometry-based antigen discovery for cancer immunotherapy

Michal Bassani-Sternberg et al.

CURRENT OPINION IN IMMUNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes

Amalie Kai Bentzen et al.

NATURE BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

Michal Bassani-Sternberg et al.

NATURE COMMUNICATIONS (2016)

Article Genetics & Heredity

pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens

Jasreet Hundal et al.

GENOME MEDICINE (2016)

Review Oncology

Current tools for predicting cancer-specific T cell immunity

David Gfeller et al.

ONCOIMMUNOLOGY (2016)

Article Biochemical Research Methods

Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

Michal Bassani-Sternberg et al.

MOLECULAR & CELLULAR PROTEOMICS (2015)

Review Multidisciplinary Sciences

Neoantigens in cancer immunotherapy

Ton N. Schumacher et al.

SCIENCE (2015)

Article Cell Biology

A comprehensive analysis of peptides presented by HLA-A1

K. Giam et al.

TISSUE ANTIGENS (2015)

Article Biochemistry & Molecular Biology

The immune epitope database (IEDB) 3.0

Randi Vita et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The IPD and IMGT/HLA database: allele variant databases

James Robinson et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD)

Geert P. M. Mommen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Genetics & Heredity

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

Edita Karosiene et al.

IMMUNOGENETICS (2012)

Article Biochemistry & Molecular Biology

MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets

TaeHyung Kim et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biochemistry & Molecular Biology

Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands

Gabor Mester et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2011)

Article Biochemistry & Molecular Biology

The multiple-specificity landscape of modular peptide recognition domains

David Gfeller et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

Luiz Gonzaga Almeida et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemical Research Methods

A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval

Naomi Habib et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

M Nielsen et al.

PROTEIN SCIENCE (2003)