4.6 Article

Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity

Emanuele Bosi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Biochemical Research Methods

Heading in the right direction: thermodynamics-based network analysis and pathway engineering

Meric Ataman et al.

CURRENT OPINION IN BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

Targeting the intersubunit cavity of Plasmodium falciparum glutathione reductase by a novel natural inhibitor: Computational and experimental evidence

Chetna Tyagi et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

PlasmoGEM, a database supporting a community resource for large-scale experimental genetics in malaria parasites

Frank Schwach et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis

Stepan Tymoshenko et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

1H-NMR metabolite profiles of different strains of Plasmodium falciparum

Rongwei Teng et al.

BIOSCIENCE REPORTS (2014)

Article Multidisciplinary Sciences

Targeting NAD+ Metabolism in the Human Malaria Parasite Plasmodium falciparum

Jessica K. O'Hara et al.

PLOS ONE (2014)

Article Biochemistry & Molecular Biology

Reduced glycerol incorporation into phospholipids contributes to impaired intra-erythrocytic growth of glycerol kinase knockout Plasmodium falciparum parasites

Kubendran Naidoo et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2013)

Article Biotechnology & Applied Microbiology

Functional genomics of Plasmodium falciparum using metabolic modelling and analysis

Stepan Tymoshenko et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2013)

Article Biochemistry & Molecular Biology

Biosynthesis of GDP-fucose and Other Sugar Nucleotides in the Blood Stages of Plasmodium falciparum

Silvia Sanz et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Review Multidisciplinary Sciences

Insights Gained from P. falciparum Cultivation in Modified Media

Sanjay A. Desai

SCIENTIFIC WORLD JOURNAL (2013)

Article Biochemical Research Methods

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Agren et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Chemistry, Medicinal

Purine and Pyrimidine Pathways as Targets in Plasmodium falciparum

Maria Belen Cassera et al.

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2011)

Review Microbiology

Network thermodynamics in the post-genomic era

Keng Cher Soh et al.

CURRENT OPINION IN MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Functional genetic analysis of the Plasmodium falciparum deoxyxylulose 5-phosphate reductoisomerase gene

Audrey R. Odom et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2010)

Article Biochemistry & Molecular Biology

New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

Thomas D. Otto et al.

MOLECULAR MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

What is flux balance analysis?

Jeffrey D. Orth et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

A protocol for generating a high-quality genome-scale metabolic reconstruction

Ines Thiele et al.

NATURE PROTOCOLS (2010)

Article Biochemistry & Molecular Biology

Dihydroorotase of human malarial parasite Plasmodium falciparum differs from host enzyme

Sudaratana R. Krungkrai et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Article Biophysics

Group contribution method for thermodynamic analysis of complex metabolic networks

Matthew D. Jankowski et al.

BIOPHYSICAL JOURNAL (2008)

Article Chemistry, Medicinal

A potent, covalent inhibitor of orotidine 5′-monophosphate decarboxylase with antimalarial activity

Angelica M. Bello et al.

JOURNAL OF MEDICINAL CHEMISTRY (2007)

Article Biophysics

Thermodynamics-based metabolic flux analysis

Christopher S. Henry et al.

BIOPHYSICAL JOURNAL (2007)

Article Biophysics

Genome-scale thermodynamic analysis of Escherichia coli metabolism

CS Henry et al.

BIOPHYSICAL JOURNAL (2006)

Article Biochemistry & Molecular Biology

Protein database searches using compositionally adjusted substitution matrices

SF Altschul et al.

FEBS JOURNAL (2005)

Article Multidisciplinary Sciences

Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network

I Famili et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biotechnology & Applied Microbiology

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

R Mahadevan et al.

METABOLIC ENGINEERING (2003)

Article Biochemistry & Molecular Biology

Thioredoxin reductase is essential for the survival of Plasmodium falciparum erythrocytic stages

Z Krnajski et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Review Multidisciplinary Sciences

Systems biology: A brief overview

H Kitano

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Biosynthesis of glycosphingolipids de-novo by the human malaria parasite Plasmodium falciparum

P Gerold et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2001)