4.6 Article

Computational prediction of the pKas of small peptides through Conceptual DFT descriptors

Journal

CHEMICAL PHYSICS LETTERS
Volume 671, Issue -, Pages 138-141

Publisher

ELSEVIER
DOI: 10.1016/j.cplett.2017.01.038

Keywords

Computational chemistry; Peptides; Conceptual; DFT

Funding

  1. CIMAV
  2. SC
  3. Consejo Nacional de Ciencia y Tecnologia (CONACYT, Mexico) through Basic Science Research [219566/2014]
  4. Foreign Sabbatical Leave [265217/2016]
  5. Sabbatical Fellow at the University of the Balearic Islands
  6. Ministerio de Economia y Competitividad (MINECO)
  7. European Fund for Regional Development (FEDER) [CTQ2014-55835-R]

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The experimental pKa of a group of simple amines have been plotted against several Conceptual DFT descriptors calculated by means of different density functionals, basis sets and solvation schemes. It was found that the best fits are those that relate the pKa of the amines with the global hardness I/through the MN12SX density functional in connection with the Def2TZVP basis set and the SMD solvation model, using water as a solvent. The parameterized equation resulting from the linear regression analysis has then been used for the prediction of the pKa of small peptides of interest in the study of diabetes and Alzheimer disease. The accuracy of the results is relatively good, with a MAD of 0.36 units of pICa. (c) 2017 Elsevier B.V. All rights reserved.

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