Journal
STANDARDS IN GENOMIC SCIENCES
Volume 12, Issue -, Pages -Publisher
BMC
DOI: 10.1186/s40793-017-0249-z
Keywords
Pedobacter; Crude oil; Degradation; Genome
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Funding
- International Scientific and Technological Cooperation Projects of the Ministry of Science and Technology [2014DFA30330]
- National Science Foundation of China [41271265]
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Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 degrees C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter genus. The 6.58 Mb genome has an average G + C content of 41.31% and encodes 5464 genes. In addition, annotation revealed that Pedobacter steynii DX4 has cold shock proteins, abundant response regulators for cell motility, and enzymes involved in energy conversion and fatty acid metabolism. The genomic characteristics could provide information for further study of oil-degrading microbes for recovery of crude oil polluted environment.
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