4.7 Article

poRe GUIs for parallel and real-time processing of MinION sequence data

Journal

BIOINFORMATICS
Volume 33, Issue 14, Pages 2207-2208

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx136

Keywords

-

Funding

  1. Biotechnology and Biological Sciences Research Council (BBSRC) [BB/M020037/1, BB/J004243/1, BB/J004235/1, BBS/E/D/20310000]
  2. Biotechnology and Biological Sciences Research Council [BBS/E/D/20002173, BBS/E/D/10002070, BBS/E/D/20310000, BB/M020037/1] Funding Source: researchfish
  3. BBSRC [BBS/E/D/20310000, BBS/E/D/20002173, BB/M020037/1] Funding Source: UKRI

Ask authors/readers for more resources

Motivation: Oxford Nanopore's MinION device has matured rapidly and is now capable of producing over one million reads and several gigabases of sequence data per run. The nature of the MinION output requires new tools that are easy to use by scientists with a range of computational skills and which enable quick and simple QC and data extraction from MinION runs. Results: We have developed two GUIs for the R package poRe that allow parallel and real-time processing of MinION datasets. Both GUIs are capable of extracting sequence-and meta-data from large MinION datasets via a friendly point-and-click interface using commodity hardware.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

No Data Available
No Data Available