4.8 Article

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

David Vallenet et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Microbiology

Polysaccharide Utilization Loci: Fueling Microbial Communities

Julie M. Grondin et al.

JOURNAL OF BACTERIOLOGY (2017)

Article Multidisciplinary Sciences

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

Didier Ndeh et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

Enzyme-Assisted Preparation of Furcellaran-Like κ-/β-Carrageenan

Aurelie Prechoux et al.

MARINE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Metabolic pathway of 3,6-anhydro-D-galactose in carrageenan-degrading microorganisms

Sun Bok Lee et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

Purification, crystallization and structural elucidation of D-galactaro-1, 4-lactone cycloisomerase from Agrobacterium tumefaciens involved in pectin degradation

Matthew W. Vetting et al.

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

Fiona Cuskin et al.

NATURE (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Nicolas Terrapon et al.

BIOINFORMATICS (2015)

Review Biotechnology & Applied Microbiology

Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications

Marjolaine Martin et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

Characterization of a Novel β-L- Arabinofuranosidase in Bifidobacterium longum

Kiyotaka Fujita et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Multidisciplinary Sciences

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes

Johan Larsbrink et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

The carbohydrate-active enzymes database (CAZy) in 2013

Vincent Lombard et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biotechnology & Applied Microbiology

Controlling Carrageenan Structure Using a Novel Formylglycine-Dependent Sulfatase, an Endo-4S-iota-Carrageenan Sulfatase

Aurelie Prechoux et al.

MARINE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER

Oliver S. Smart et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Biochemical and Structural Characterization of the Complex Agarolytic Enzyme System from the Marine Bacterium Zobellia galactanivorans

Jan-Hendrik Hehemann et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

Jan-Hendrik Hehemann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

An introduction to data reduction: space-group determination, scaling and intensity statistics

Philip R. Evans

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2011)

Review Plant Sciences

Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants

Zoe A. Popper et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 62 (2011)

Article Biochemical Research Methods

ProtTest 3: fast selection of best-fit models of protein evolution

Diego Darriba et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Quality control and preprocessing of metagenomic datasets

Robert Schmieder et al.

BIOINFORMATICS (2011)

Article Microbiology

Discovery and structural characterization of a novel glycosidase family of marine origin

Etienne Rebuffet et al.

ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemical Research Methods

Evaluation of reference genes for real-time quantitative PCR in the marine flavobacterium Zobellia galactanivorans

Francois Thomas et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2011)

Review Microbiology

Environmental and gut Bacteroidetes: the food connection

Francois Thomas et al.

FRONTIERS IN MICROBIOLOGY (2011)

Article Biochemical Research Methods

Integration, scaling, space-group assignment and post-refinement

Wolfgang Kabsch

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)

Article Biochemical Research Methods

XDS

Wolfgang Kabsch

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)

Article Biochemical Research Methods

Features and development of Coot

P. Emsley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)

Article Biochemistry & Molecular Biology

Identification of Catalytic Residues and Mechanistic Analysis of Family GH82 l-Carrageenases

Etienne Rebuffet et al.

BIOCHEMISTRY (2010)

Article Multidisciplinary Sciences

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

Jan-Hendrik Hehemann et al.

NATURE (2010)

Article Biotechnology & Applied Microbiology

MARINE-EXPRESS: taking advantage of high throughput cloning and expression strategies for the post-genomic analysis of marine organisms

Agnes Groisillier et al.

MICROBIAL CELL FACTORIES (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Chemistry, Multidisciplinary

Phaser crystallographic software

Airlie J. McCoy et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)

Article Biochemical Research Methods

Scaling and assessment of data quality

P Evans

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2006)

Article Biochemical Research Methods

Protein production by auto-induction in high-density shaking cultures

FW Studier

PROTEIN EXPRESSION AND PURIFICATION (2005)

Article Biochemical Research Methods

REFMAC5 dictionary:: organization of prior chemical knowledge and guidelines for its use

AA Vagin et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

CRANK: New methods for automated macromolecular crystal structure solution

SR Ness et al.

STRUCTURE (2004)

Article Biochemical Research Methods

Substructure solution with SHELXD

TR Schneider et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2002)

Article Biochemistry & Molecular Biology

ι-Carrageenases constitute a novel family of glycoside hydrolases, unrelated to that of κ-carrageenases

T Barbeyron et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Biochemical Research Methods

Artemis: sequence visualization and annotation

K Rutherford et al.

BIOINFORMATICS (2000)

Article Biochemical Research Methods

Expression, purification, crystallization and preliminary X-ray analysis of the i-carrageenase from Alteromonas fortis

G Michel et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2000)