4.8 Article

Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows

Aaron T. L. Lun et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

FOXA1 acts upstream of GATA2 and AR in hormonal regulation of gene expression

J. C. Zhao et al.

ONCOGENE (2016)

Review Genetics & Heredity

Enhancec Identification of Transcriptional Enhancers Provides Vechanistic Insights into Diseases

Yasuhiro Murakawa et al.

TRENDS IN GENETICS (2016)

Article Multidisciplinary Sciences

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation

Zoltan Simandi et al.

JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2016)

Article Biochemistry & Molecular Biology

Histone Variant H2AZ2 Mediates Proliferation and Drug Sensitivity of Malignant Melanoma

Chiara Vardabasso et al.

MOLECULAR CELL (2015)

Article Biochemistry & Molecular Biology

The histone variant H2A.Z is an important regulator of enhancer activity

Nylene Brunelle et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Medicine, Research & Experimental

Genome-wide analysis of androgen receptor binding sites in prostate cancer cells

Yue Cheng et al.

EXPERIMENTAL AND THERAPEUTIC MEDICINE (2015)

Article Oncology

CtBP2 Modulates the Androgen Receptor to Promote Prostate Cancer Progression

Ken-ichi Takayama et al.

CANCER RESEARCH (2014)

Review Biochemistry & Molecular Biology

Histone variants: emerging players in cancer biology

Chiara Vardabasso et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2014)

Article Multidisciplinary Sciences

Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer

Irfan A. Asangani et al.

NATURE (2014)

Article Multidisciplinary Sciences

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation

Chen-Lin Hsieh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Cell & Tissue Engineering

Post-translational modifications of the histone variant h2az

Ana Sevilla et al.

STEM CELL RESEARCH (2014)

Article Biochemical Research Methods

GAT: a simulation framework for testing the association of genomic intervals

Andreas Heger et al.

BIOINFORMATICS (2013)

Article Biotechnology & Applied Microbiology

Dynamic regulation of epigenomic landscapes during hematopoiesis

Brian J. Abraham et al.

BMC GENOMICS (2013)

Article Biochemistry & Molecular Biology

Super-Enhancers in the Control of Cell Identity and Disease

Denes Hnisz et al.

Article Biochemistry & Molecular Biology

H2A.Z-dependent crosstalk between enhancer and promoter regulates Cyclin D1 expression

M. Dalvai et al.

ONCOGENE (2013)

Article Biochemistry & Molecular Biology

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules

Theresa K. Kelly et al.

GENOME RESEARCH (2012)

Letter Biochemical Research Methods

ChromHMM: automating chromatin-state discovery and characterization

Jason Ernst et al.

NATURE METHODS (2012)

Article Statistics & Probability

MEASURING REPRODUCIBILITY OF HIGH-THROUGHPUT EXPERIMENTS

Qunhua Li et al.

ANNALS OF APPLIED STATISTICS (2011)

Article Biochemical Research Methods

PeakRanger: A cloud-enabled peak caller for ChIP-seq data

Xin Feng et al.

BMC BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Phospho-MED1-enhanced UBE2C locus looping drives castration-resistant prostate cancer growth

Zhong Chen et al.

EMBO JOURNAL (2011)

Article Biochemistry & Molecular Biology

Dynamic Nucleosome-Depleted Regions at Androgen Receptor Enhancers in the Absence of Ligand in Prostate Cancer Cells

Claudia Andreu-Vieyra et al.

MOLECULAR AND CELLULAR BIOLOGY (2011)

Article Multidisciplinary Sciences

Mapping and analysis of chromatin state dynamics in nine human cell types

Jason Ernst et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

USP10 deubiquitylates the histone variant H2A.Z and both are required for androgen receptor-mediated gene activation

Ryan Draker et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Cell & Tissue Engineering

Lineage Specific Methylation of the Elf5 Promoter in Mammary Epithelial Cells

Heather J. Lee et al.

STEM CELLS (2011)

Article Biochemical Research Methods

A framework for oligonucleotide microarray preprocessing

Benilton S. Carvalho et al.

BIOINFORMATICS (2010)

Article Oncology

Integrative Genomic Profiling of Human Prostate Cancer

Barry S. Taylor et al.

CANCER CELL (2010)

Article Genetics & Heredity

Nucleosome dynamics define transcriptional enhancers

Housheng Hansen He et al.

NATURE GENETICS (2010)

Article Biochemistry & Molecular Biology

A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

Francesca De Santa et al.

PLOS BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Acetylation of Vertebrate H2A.Z and Its Effect on the Structure of the Nucleosome

Toyotaka Ishibashi et al.

BIOCHEMISTRY (2009)

Article Multidisciplinary Sciences

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Nathaniel D. Heintzman et al.

NATURE (2009)

Review Biochemistry & Molecular Biology

H2A.Z: View from the top

Jordanka Zlatanova et al.

STRUCTURE (2008)

Article Biochemistry & Molecular Biology

A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth

Qianben Wang et al.

MOLECULAR CELL (2007)

Article Biochemical Research Methods

DNA methylation: Bisulphite modification and analysis

Susan J. Clark et al.

NATURE PROTOCOLS (2006)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Cell Biology

Histone variants: deviants?

RT Kamakaka et al.

GENES & DEVELOPMENT (2005)

Article Biochemistry & Molecular Biology

The replacement histone H2A.Z in a hyperacetylated form is a feature of active genes in the chicken

K Bruce et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Oncology

Androgen receptor involvement in the progression of prostate cancer

H Suzuki et al.

ENDOCRINE-RELATED CANCER (2003)

Article Biochemistry & Molecular Biology

Histone H2A.Z acetylation modulates an essential charge patch

QH Ren et al.

MOLECULAR CELL (2001)

Article Biochemistry & Molecular Biology

Plat-E: an efficient and stable system for transient packaging of retroviruses

S Morita et al.

GENE THERAPY (2000)