4.8 Article

'ARMAN' archaea depend on association with euryarchaeal host in culture and in situ

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk et al.

GENOME RESEARCH (2017)

Article Biochemistry & Molecular Biology

Heme Synthesis and Acquisition in Bacterial Pathogens

Jacob E. Choby et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Biochemical Research Methods

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

Daniel H. Huson et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Microbiology

Diversity and Evolution of Type IV pili Systems in Archaea

Kira S. Makarova et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

Cindy J. Castelle et al.

CURRENT BIOLOGY (2015)

Review Cell Biology

A giant molecular proton pump: structure and mechanism of respiratory complex I

Leonid A. Sazanov

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis

Bhavjinder K. Dhillon et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Microbiology

The universal tree of life: an update

Patrick Forterre

FRONTIERS IN MICROBIOLOGY (2015)

Article Evolutionary Biology

Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota

Celine Petitjean et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

Richard M. Leggett et al.

BIOINFORMATICS (2014)

Article Ecology

Southern Appalachian Peatlands Support High Archaeal Diversity

A. N. Hawkins et al.

MICROBIAL ECOLOGY (2014)

Review Microbiology

Carbohydrate Metabolism in Archaea: Current Insights into Unusual Enzymes and Pathways and Their Regulation

Christopher Braesen et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2014)

Review Biochemistry & Molecular Biology

Evolution of cytochrome bc complexes: From membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates

Daria V. Dibrova et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)

Article Multidisciplinary Sciences

Insights into the phylogeny and coding potential of microbial dark matter

Christian Rinke et al.

NATURE (2013)

Review Microbiology

Microbial syntrophy: interaction for the common good

Brandon E. L. Morris et al.

FEMS MICROBIOLOGY REVIEWS (2013)

Review Biochemistry & Molecular Biology

The Alternative complex III: Properties and possible mechanisms for electron transfer and energy conservation

Patricia N. Refojo et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Phylogenomics of Prokaryotic Ribosomal Proteins

Natalya Yutin et al.

PLOS ONE (2012)

Review Biotechnology & Applied Microbiology

Environmental, Biogeographic, and Biochemical Patterns of Archaea of the Family Ferroplasmaceae

Olga V. Golyshina

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Review Biochemistry & Molecular Biology

The cytochrome bd respiratory oxygen reductases

Vitaliy B. Borisov et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2011)

Article Biochemical Research Methods

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

Marcus Lechner et al.

BMC BIOINFORMATICS (2011)

Article Ecology

Microbial community structure across the tree of life in the extreme Rio Tinto

Linda A. Amaral-Zettler et al.

ISME JOURNAL (2011)

Article Biochemical Research Methods

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

Miklos Csuroes

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Enigmatic, ultrasmall, uncultivated Archaea

Brett J. Baker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Biology

Evolutionary primacy of sodium bioenergetics

Armen Y. Mulkidjanian et al.

BIOLOGY DIRECT (2008)

Article Multidisciplinary Sciences

Lineages of acidophilic archaea revealed by community genomic analysis

Brett J. Baker et al.

SCIENCE (2006)

Article Biochemical Research Methods

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models

Stephan Waack et al.

BMC BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Iron-source preference of Staphylococcus aureus infections

EP Skaar et al.

SCIENCE (2004)

Article Biochemical Research Methods

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

RC Edgar

BMC BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

The genome of Nanoarchaeum equitans:: Insights into early archaeal evolution and derived parasitism

E Waters et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemical Research Methods

IslandPath: aiding detection of genomic islands in prokaryotes

W Hsiao et al.

BIOINFORMATICS (2003)

Article Multidisciplinary Sciences

A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont

H Huber et al.

NATURE (2002)