Journal
BIOINFORMATICS
Volume 33, Issue 18, Pages 2938-2940Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx364
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Funding
- National Institutes of Health [R00HG007583, U54HG007963, U01CA198935]
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Motivation: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. Results: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties. Availability and implementation: UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/. Contact: nils@hms.harvard.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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