Related references
Note: Only part of the references are listed.Engineered LINE-1 retrotransposition in nondividing human neurons
Angela Macia et al.
GENOME RESEARCH (2017)
The UCSC Genome Browser database: 2016 update
Matthew L. Speir et al.
NUCLEIC ACIDS RESEARCH (2016)
Pseudogene integrator complex subunit 6 pseudogene 1 (INTS6P1) as a novel plasma-based biomarker for hepatocellular carcinoma screening
Ka Yin Lui et al.
TUMOR BIOLOGY (2016)
Pseudogene-expressed RNAs: a new frontier in cancers
Xuefei Shi et al.
TUMOR BIOLOGY (2016)
Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions
Oleksii Bryzghalov et al.
ACTA BIOCHIMICA POLONICA (2016)
Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii
Marcin Jakalski et al.
BIOLOGY DIRECT (2016)
Genome-wide methylation analysis of retrocopy-associated CpG islands and their genomic environment
Katrin Grothaus et al.
EPIGENETICS (2016)
Identification of Multiple Forms of RNA Transcripts Associated with Human-Specific Retrotransposed Gene Copies
Saori Mori et al.
GENOME BIOLOGY AND EVOLUTION (2016)
LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans
Shengjun Tan et al.
GENOME RESEARCH (2016)
The life history of retrocopies illuminates the evolution of new mammalian genes
Francesco Nicola Carelli et al.
GENOME RESEARCH (2016)
Pseudogene transcripts: Participants in tumorigenicity and promising therapeutic targets
Xin Zhang et al.
LEUKEMIA RESEARCH (2016)
Retrotransposons as regulators of gene expression
Reyad A. Elbarbary et al.
SCIENCE (2016)
Distinct temporal changes in host cell lncRNA expression during the course of an adenovirus infection
Hongxing Zhao et al.
VIROLOGY (2016)
Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism
Zhenhua Liu et al.
NATURE COMMUNICATIONS (2016)
SinEx DB: a database for single exon coding sequences in mammalian genomes
Roddy Jorquera et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
The Ensembl gene annotation system
Bronwen L. Aken et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
LINE-1-like retrotransposons contribute to RNA-based gene duplication in dicots
Zhenglin Zhu et al.
SCIENTIFIC REPORTS (2016)
Expression of evolutionarily novel genes in tumors
A. P. Kozlov
INFECTIOUS AGENTS AND CANCER (2016)
Global Intersection of Long Non-Coding RNAs with Processed and Unprocessed Pseudogenes in the Human Genome
Michael J. Milligan et al.
FRONTIERS IN GENETICS (2016)
FTH1P3, a Novel H-Ferritin Pseudogene Transcriptionally Active, Is Ubiquitously Expressed and Regulated during Cell Differentiation
Maddalena Di Sanzo et al.
PLOS ONE (2016)
Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Xu Zhang et al.
SCIENTIFIC REPORTS (2016)
HMGA1P7-pseudogene regulates H19 and Igf2 expression by a competitive endogenous RNA mechanism
Marco De Martino et al.
SCIENTIFIC REPORTS (2016)
Post-Transcriptional Control of LINE-1 Retrotransposition by Cellular Host Factors in Somatic Cells
Javier G. Pizarro et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2016)
Suppression of hepatocellular carcinoma by baculovirus-mediated expression of long non-coding RNA PTENP1 and MicroRNA regulation
Chiu-Ling Chen et al.
BIOMATERIALS (2015)
microRNA-622 acts as a tumor suppressor in hepatocellular carcinoma
Wei-Hua Song et al.
CANCER BIOLOGY & THERAPY (2015)
Primate-Specific ORF0 Contributes to Retrotransposon-Mediated Diversity
Ahmet M. m Denli et al.
CELL (2015)
U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals
Aurelien J. Doucet et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
VEGFR-1 Pseudogene Expression and Regulatory Function in Human Colorectal Cancer Cells
Xiangcang Ye et al.
MOLECULAR CANCER RESEARCH (2015)
A 3′ Poly(A) Tract Is Required for LINE-1 Retrotransposition
Aurelien J. Doucet et al.
MOLECULAR CELL (2015)
Allele-Selective Transcriptome Recruitment to Polysomes Primed for Translation: Protein-Coding and Noncoding RNAs, and RNA Isoforms
Roshan Mascarenhas et al.
PLOS ONE (2015)
The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes
Lorena Pantano et al.
RNA (2015)
Differentially-Expressed Pseudogenes in HIV-1 Infection
Aditi Gupta et al.
VIRUSES-BASEL (2015)
Pseudogene INTS6P1 regulates its cognate gene INTS6 through competitive binding of miR-17-5p in hepatocellular carcinoma
Haoran Peng et al.
ONCOTARGET (2015)
Inter-population Differences in Retrogene Loss and Expression in Humans
Michal Kabza et al.
PLOS GENETICS (2015)
A feedback loop between nonsense-mediated decay and the retrogene DUX4 in facioscapulohumeral muscular dystrophy
Qing Feng et al.
ELIFE (2015)
Retrotransposons and pseudogenes regulate mRNAs and IncRNAs via the piRNA pathway in the germline
Toshiaki Watanabe et al.
GENOME RESEARCH (2015)
piRNAs from Pig Testis Provide Evidence for a Conserved Role of the Piwi Pathway in Post-Transcriptional Gene Regulation in Mammals
Daniel Gebert et al.
PLOS ONE (2015)
MiR-492 contributes to cell proliferation and cell cycle of human breast cancer cells by suppressing SOX7 expression
Fei Shen et al.
TUMOR BIOLOGY (2015)
Pseudogenes in human cancer
Laura Poliseno et al.
FRONTIERS IN MEDICINE (2015)
Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
Sandra R. Richardson et al.
BIOESSAYS (2014)
Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline
James H. Crichton et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2014)
Retroduplication and loss of parental genes is a mechanism for the generation of intronless genes in Ciona intestinalis and Ciona savignyi
Dong Seon Kim et al.
DEVELOPMENT GENES AND EVOLUTION (2014)
The Imprinted NPAP1 Gene in the Prader-Willi Syndrome Region Belongs to a POM121-Related Family of Retrogenes
Lisa C. Neumann et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Primary Immunodeficiency Caused by an Exonized Retroposed Gene Copy Inserted in the CYBB Gene
Martin de Boer et al.
HUMAN MUTATION (2014)
Pseudogene PTENP1 Functions as a Competing Endogenous RNA to Suppress Clear-Cell Renal Cell Carcinoma Progression
Gan Yu et al.
MOLECULAR CANCER THERAPEUTICS (2014)
A draft map of the human proteome
Min-Sik Kim et al.
NATURE (2014)
Pollen-Specific Activation of Arabidopsis Retrogenes Is Associated with Global Transcriptional Reprogramming
Ahmed Abdelsamad et al.
PLANT CELL (2014)
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades
Tony Heitkam et al.
PLANT JOURNAL (2014)
Characterization of Human Pseudogene- Derived Non- Coding RNAs for Functional Potential
Xingyi Guo et al.
PLOS ONE (2014)
Small RNA profiling and characterization of piRNA clusters in the adult testes of the common marmoset, a model primate
Takamasa Hirano et al.
RNA (2014)
Processed pseudogenes acquired somatically during cancer development
Susanna L. Cooke et al.
NATURE COMMUNICATIONS (2014)
HMGA1 pseudogenes as candidate proto-oncogenic competitive endogenous RNAs
Francesco Esposito et al.
ONCOTARGET (2014)
Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes
C. Vitte et al.
ANNALS OF BOTANY (2013)
RCPedia: a database of retrocopied genes
Fabio C. P. Navarro et al.
BIOINFORMATICS (2013)
Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss
Tao Zhu et al.
BMC BIOLOGY (2013)
Pseudogene OCT4-pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR-145 in hepatocellular carcinoma
Lei Wang et al.
CARCINOGENESIS (2013)
Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division
Alexej Abyzov et al.
GENOME RESEARCH (2013)
Orphan Retrogenes in the Human Genome
Joanna Ciomborowska et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
Per Johnsson et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma
Wen-Ling Chan et al.
NUCLEIC ACIDS RESEARCH (2013)
Retrotransposon replication in plants
Alan H. Schulman
CURRENT OPINION IN VIROLOGY (2013)
Gene Copy-Number Polymorphism Caused by Retrotransposition in Humans
Daniel R. Schrider et al.
PLOS GENETICS (2013)
A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics
Nicole A. Rapicavoli et al.
ELIFE (2013)
Retrotransposition of gene transcripts leads to structural variation in mammalian genomes
Adam D. Ewing et al.
GENOME BIOLOGY (2013)
Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers
Shanker Kalyana-Sundaram et al.
CELL (2012)
A physical, genetic and functional sequence assembly of the barley genome
Klaus F. X. Mayer et al.
NATURE (2012)
An integrated map of genetic variation from 1,092 human genomes
David M. Altshuler et al.
NATURE (2012)
Does expression of the retrogene UTP14c in the ovary pre-dispose women to ovarian cancer?
Jan Rohozinski et al.
MEDICAL HYPOTHESES (2012)
The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery
Julija Raiz et al.
NUCLEIC ACIDS RESEARCH (2012)
Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus
Michael Cowley et al.
NUCLEIC ACIDS RESEARCH (2012)
The GENCODE pseudogene resource
Baikang Pei et al.
GENOME BIOLOGY (2012)
Non-coding RNA and pseudogenes in neurodegenerative diseases: “The (un)Usual Suspects”
Valerio Costa et al.
Frontiers in Genetics (2012)
IGD: A resource for intronless genes in the human genome
Amel Louhichi et al.
GENE (2011)
Retrogenes in Rice (Oryza sativa L. ssp japonica) Exhibit Correlated Expression with Their Source Genes
Hiroaki Sakai et al.
GENOME BIOLOGY AND EVOLUTION (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and resurrected pseudogenes in the mouse genome
Markus Brosch et al.
GENOME RESEARCH (2011)
MicroRNA-492 is Processed from the Keratin 19 Gene and Up-Regulated in Metastatic Hepatoblastoma
Julia von Frowein et al.
HEPATOLOGY (2011)
Retrotransposition of marked SVA elements by human L1s in cultured cells
Dustin C. Hancks et al.
HUMAN MOLECULAR GENETICS (2011)
Deletion of PTENP1 Pseudogene in Human Melanoma
Laura Poliseno et al.
JOURNAL OF INVESTIGATIVE DERMATOLOGY (2011)
Primate and Rodent Specific Intron Gains and the Origin of Retrogenes with Splice Variants
Michal W. Szczesniak et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition
Elena Khazina et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
Intronic L1 Retrotransposons and Nested Genes Cause Transcriptional Interference by Inducing Intron Retention, Exonization and Cryptic Polyadenylation
Kristel Kaer et al.
PLOS ONE (2011)
Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei
Yan-Zi Wen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Pseudogenes as an alternative source of natural antisense transcripts
Enrique M. Muro et al.
BMC EVOLUTIONARY BIOLOGY (2010)
LINE-1 Retrotransposition Activity in Human Genomes
Christine R. Beck et al.
CELL (2010)
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
Adam D. Ewing et al.
GENOME RESEARCH (2010)
RAB6C Is a Retrogene that Encodes a Centrosomal Protein Involved in Cell Cycle Progression
Joanne Young et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
Laura Poliseno et al.
NATURE (2010)
A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
Miriam K. Konkel et al.
SEMINARS IN CANCER BIOLOGY (2010)
Pseudogene-mediated posttranscriptional silencing of HMGA1 can result in insulin resistance and type 2 diabetes
Eusebio Chiefari et al.
NATURE COMMUNICATIONS (2010)
Connexin43 pseudogene in breast cancer cells offers a novel therapeutic target
Andrew Bier et al.
MOLECULAR CANCER THERAPEUTICS (2009)
RNA-based gene duplication: mechanistic and evolutionary insights
Henrik Kaessmann et al.
NATURE REVIEWS GENETICS (2009)
A Functional Mouse Retroposed Gene Rps23r1 Reduces Alzheimer's β-Amyloid Levels and Tau Phosphorylation
Yun-wu Zhang et al.
NEURON (2009)
An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs
Heidi G. Parker et al.
SCIENCE (2009)
Small RNAs Originated from Pseudogenes: cis- or trans-Acting?
Xingyi Guo et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Retrocopy contributions to the evolution of the human genome
Robert Baertsch et al.
BMC GENOMICS (2008)
Retrotransposons revisited: The restraint and rehabilitation of parasites
John L. Goodier et al.
CELL (2008)
Unwitting hosts fall victim to imprinting
Ruth B. McCole et al.
EPIGENETICS (2008)
Regulation of alternative polyadenylation by genomic imprinting
Andrew J. Wood et al.
GENES & DEVELOPMENT (2008)
Retrotransposition as a source of new promoters
Kohji Okamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
Toshiaki Watanabe et al.
NATURE (2008)
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
Oliver H. Tam et al.
NATURE (2008)
The diversity of retrotransposons and the properties of their reverse transcriptases
Thomas H. Eickbush et al.
VIRUS RESEARCH (2008)
Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein
Lia Rosso et al.
PLOS BIOLOGY (2008)
Functional demarcation of active and silent chromatin domains in human HOX loci by Noncoding RNAs
John L. Rinn et al.
CELL (2007)
Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome
Shurjo K. Sen et al.
NUCLEIC ACIDS RESEARCH (2007)
Transcriptional interferences in cis natural antisense transcripts of humans and mice
Naoki Osato et al.
GENETICS (2007)
A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation
Andrew J. Wood et al.
PLOS GENETICS (2007)
Quantifying the major mechanisms of recent gene duplications in the human and mouse genomes: a novel strategy to estimate gene duplication rates
Deng Pan et al.
GENOME BIOLOGY (2007)
Genome-wide profiling and analysis of Arabidopsis siRNAs
Kristin D. Kasschau et al.
PLOS BIOLOGY (2007)
Computational characterization of multiple Gag-like human proteins
Monica Campillos et al.
TRENDS IN GENETICS (2006)
High rate of chimeric gene origination by retroposition in plant genomes
Wen Wang et al.
PLANT CELL (2006)
PseudoPipe: an automated pseudogene identification pipeline
Zhaolei Zhang et al.
BIOINFORMATICS (2006)
L1 retrotransposition in nondividing and primary human somatic cells
Shuji Kubo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Processed pseudogenes, processed genes, and spontaneous mutations in the Arabidopsis genome
David Benovoy et al.
JOURNAL OF MOLECULAR EVOLUTION (2006)
Genome-wide search of gene conversions in duplicated genes of mouse and rat
K Ezawa et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Primate MicroRNAs miR-220 and miR-492 lie within processed pseudogenes
EJ Devor
JOURNAL OF HEREDITY (2006)
Evolutionary fate of retroposed gene copies in the human genome
N Vinckenbosch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2006)
Transcriptional interference - a crash course
KE Shearwin et al.
TRENDS IN GENETICS (2005)
Subfunctionalization of duplicated genes as a transition state to neofunctionalization
S Rastogi et al.
BMC EVOLUTIONARY BIOLOGY (2005)
The pattern of intron loss
SW Roy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs
J Perreault et al.
NUCLEIC ACIDS RESEARCH (2005)
The Vertebrate Genome Annotation (Vega) database
JL Ashurst et al.
NUCLEIC ACIDS RESEARCH (2005)
Harbinger transposons and an ancient HARBI1 gene derived from a transposase
VV Kapitonov et al.
DNA AND CELL BIOLOGY (2004)
Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1
DM Sayah et al.
NATURE (2004)
Connexin43 pseudogene is expressed in tumor cells and inhibits growth
M Kandouz et al.
ONCOGENE (2004)
Sequence composition and genome organization of maize
J Messing et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The diversity of LTR retrotransposons
ER Havecker et al.
GENOME BIOLOGY (2004)
The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice
SH Jang et al.
PLANT MOLECULAR BIOLOGY (2003)
The unusual phylogenetic retrotransposons: A distribution of hypothesis
JD Boeke
GENOME RESEARCH (2003)
LINE-mediated retrotransposition of marked Alu sequences
M Dewannieux et al.
NATURE GENETICS (2003)
Evolution by gene duplication: an update
JZ Zhang
TRENDS IN ECOLOGY & EVOLUTION (2003)
Hot L1s account for the bulk of retrotransposition in the human population
B Brouha et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes
T Uechi et al.
NUCLEIC ACIDS RESEARCH (2002)
Human L1 element target-primed reverse transcription in vitro
GJ Cost et al.
EMBO JOURNAL (2002)
Processed Pseudogenes of human endogenous retroviruses generated by LINEs: Their integration, stability, and distribution
A Pavlicek et al.
GENOME RESEARCH (2002)
A novel hybrid open reading frame formed by multiple cellular gene transductions by a plant long terminal repeat retroelement
N Elrouby et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
BC Meyers et al.
GENOME RESEARCH (2001)
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
HS Malik et al.
GENOME RESEARCH (2001)
Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
M Speek
MOLECULAR AND CELLULAR BIOLOGY (2001)
Human L1 retrotransposition:: cis preference versus trans complementation
W Wei et al.
MOLECULAR AND CELLULAR BIOLOGY (2001)
Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
SL Martin et al.
MOLECULAR AND CELLULAR BIOLOGY (2001)
An evolutionarily conserved germ cell-specific hnRNP is encoded by a retrotransposed gene
DJ Elliott et al.
HUMAN MOLECULAR GENETICS (2000)
Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
S Mi et al.
NATURE (2000)
Human LINE retrotransposons generate processed pseudogenes
C Esnault et al.
NATURE GENETICS (2000)
Share Paper
