Journal
BIOINFORMATICS
Volume 33, Issue 19, Pages 3137-3139Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx373
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Funding
- Microbiomes in Transition Initiative LDRD at the Pacific Northwest National Laboratory
- DOE [DE-AC06-76RL01830]
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FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The dashboard groups samples in drop-downs for navigation among the data sets, utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data. Availability and implementation: FQC is implemented in Python 3 and Javascript, and is maintained under an MIT license. Documentation and source code is available at: https://github.com/pnnl/fqc.
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