Related references
Note: Only part of the references are listed.The Region of Difference Four is a Robust Genetic Marker for Subtyping Mycobacteriumcaprae Isolates and is Linked to Spatial Distribution of Three Subtypes
A. Rettinger et al.
TRANSBOUNDARY AND EMERGING DISEASES (2017)
Mycobacterium tuberculosis exposure of livestock in a German dairy farm: implications for intra vitam diagnosis of bovine tuberculosis in an officially tuberculosis-free country
T. Eisenberg et al.
EPIDEMIOLOGY AND INFECTION (2016)
Role of Cattle Movements in Bovine Tuberculosis Spread in France between 2005 and 2014
Aurore Palisson et al.
PLOS ONE (2016)
BEACON: automated tool for Bacterial GEnome Annotation ComparisON
Manal Kalkatawi et al.
BMC GENOMICS (2015)
Nontuberculous Mycobacteria Infections in Immunosuppressed Hosts
Emily Henkle et al.
CLINICS IN CHEST MEDICINE (2015)
The variability and seasonality of the environmental reservoir of Mycobacterium bovis shed by wild European badgers
Hayley C. King et al.
SCIENTIFIC REPORTS (2015)
Large-scale whole genome sequencing of M-tuberculosis provides insights into transmission in a high prevalence area
J. A. Guerra-Assuncao et al.
ELIFE (2015)
Tracking a Tuberculosis Outbreak Over 21 Years: Strain-Specific Single-Nucleotide Polymorphism Typing Combined With Targeted Whole-Genome Sequencing
David Stucki et al.
JOURNAL OF INFECTIOUS DISEASES (2015)
Comparative Whole-Genome Analysis of Clinical Isolates Reveals Characteristic Architecture of Mycobacterium tuberculosis Pangenome
Vinita Periwal et al.
PLOS ONE (2015)
Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae
Jose de la Fuente et al.
GENOME ANNOUNCEMENTS (2015)
Red Deer as Maintenance Host for Bovine Tuberculosis, Alpine Region
Maria Fink et al.
EMERGING INFECTIOUS DISEASES (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Mycobacterium caprae infection in humans
Wolfgang M. Prodinger et al.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2014)
Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission
Laura Perez-Lago et al.
JOURNAL OF INFECTIOUS DISEASES (2014)
A dynamic model of bovine tuberculosis spread and control in Great Britain
Ellen Brooks-Pollock et al.
NATURE (2014)
Sequence Diversity in the pe_pgrs Genes of Mycobacterium tuberculosis Is Independent of Human T Cell Recognition
Richard Copin et al.
MBIO (2014)
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
Josephine M. Bryant et al.
BMC INFECTIOUS DISEASES (2013)
Region of Difference 4 in Alpine Mycobacterium caprae Isolates Indicates Three Variants
Janina Domogalla et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
Timothy M. Walker et al.
LANCET INFECTIOUS DISEASES (2013)
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Inaki Comas et al.
NATURE GENETICS (2013)
CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
Shin-Hung Lin et al.
PLOS ONE (2013)
INDIGO - INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles
Intikhab Alam et al.
PLOS ONE (2013)
Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study
Josephine M. Bryant et al.
LANCET RESPIRATORY MEDICINE (2013)
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Tim Carver et al.
BIOINFORMATICS (2012)
After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
Amine Namouchi et al.
GENOME RESEARCH (2012)
A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
Martin T. Swain et al.
NATURE PROTOCOLS (2012)
Primer3-new capabilities and interfaces
Andreas Untergasser et al.
NUCLEIC ACIDS RESEARCH (2012)
Estimating the Hidden Burden of Bovine Tuberculosis in Great Britain
Andrew J. K. Conlan et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations
Roman Biek et al.
PLOS PATHOGENS (2012)
Super-spreaders in infectious diseases
Richard A. Stein
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
Jennifer L. Gardy et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
RATT: Rapid Annotation Transfer Tool
Thomas D. Otto et al.
NUCLEIC ACIDS RESEARCH (2011)
A map of human genome variation from population-scale sequencing
David Altshuler et al.
NATURE (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Emergence of Diseases From Wildlife Reservoirs
J. C. Rhyan et al.
VETERINARY PATHOLOGY (2010)
Clinical manifestations of nontuberculous mycobacteria infections
E. Tortoli
CLINICAL MICROBIOLOGY AND INFECTION (2009)
Classification of worldwide bovine tuberculosis risk factors in cattle: a stratified approach
Marie-France Humblet et al.
VETERINARY RESEARCH (2009)
A Comparison of Phylogenetic Network Methods Using Computer Simulation
Steven M. Woolley et al.
PLOS ONE (2008)
High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography
Ruth Hershberg et al.
PLOS BIOLOGY (2008)
Enhancements and modifications of primer design program Primer3
Triinu Koressaar et al.
BIOINFORMATICS (2007)
Ante mortem diagnosis of tuberculosis in cattle:: A review of the tuberculin tests, γ-interferon assay and other ancillary diagnostic techniques
R. de la Rua-Domenech et al.
RESEARCH IN VETERINARY SCIENCE (2006)
Managing the wildlife reservoir of Mycobacterium bovis:: The Michigan, USA, experience
DJ O'Brien et al.
VETERINARY MICROBIOLOGY (2006)
Hypermutable bacteria isolated from humans - a critical analysis
Lucinda M. C. Hall et al.
MICROBIOLOGY-SGM (2006)
Characterization of Mycobacterium caprae isolates from Europe by mycobacterial interspersed repetitive unit genotyping
WM Prodinger et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Cattle movements and bovine tuberculosis in Great Britain
M Gilbert et al.
NATURE (2005)
Evaluation of surveillance strategies for bovine tuberculosis (Mycobacterium bovis) using an individual based epidemiological model
EAJ Fischer et al.
PREVENTIVE VETERINARY MEDICINE (2005)
Herd-level risk factors associated with tuberculosis breakdowns among cattle herds in England before the 2001 foot-and-mouth disease epidemic
WT Johnston et al.
BIOLOGY LETTERS (2005)
Elevation of Mycobacterium tuberculosis subsp. caprae Aranaz et al. 1999 to species rank as Mycobacterium caprae comb. nov., sp. nov.
A Aranaz et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)
The transmission of Mycobacterium bovis infection to cattle
CJC Phillips et al.
RESEARCH IN VETERINARY SCIENCE (2003)
Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
P Supply et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2001)
Cattle-to-cattle transmission of Mycobacterium bovis
AV Goodchild et al.
TUBERCULOSIS (2001)
Artemis: sequence visualization and annotation
K Rutherford et al.
BIOINFORMATICS (2000)
The physiology and pathogenicity of Mycobacterium tuberculosis grown under controlled conditions in a defined medium
BW James et al.
JOURNAL OF APPLIED MICROBIOLOGY (2000)