Journal
METHODS IN ECOLOGY AND EVOLUTION
Volume 8, Issue 12, Pages 1795-1803Publisher
WILEY
DOI: 10.1111/2041-210X.12841
Keywords
bioinformatics; community ecology; conservation; habitats; modelling; software
Categories
Funding
- Direction for Economic and Environmental Development (DDEE)
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1. There is growing interest among conservationists in biodiversity mapping based on stacked species distribution models (SSDMs), a method that combines multiple individual species distribution models to produce a community-level model. However, no user-friendly interface specifically designed to provide the basic tools needed to fit such models was available until now. 2. The ssdm package is a computer platform implemented in r providing a range of methodological approaches and parameterisation at each step in building the SSDM: e.g. pseudo-absence selection, variable contribution and model accuracy assessment, inter-model consensus forecasting, species assembly design, and calculation of weighted endemism. 3. The object-oriented design of the package is such that: users can modify existing methods, extend the framework by implementing new methods, and share them to be reproduced by others. 4. The package includes a graphical user interface to extend the use of SSDMs to a wide range of conservation scientists and practitioners.
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