Journal
BIOINFORMATICS
Volume 33, Issue 23, Pages 3813-3815Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx444
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Funding
- Netherlands Scientific Organization (NWO ChemThem program)
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A Summary: We introduce cgHeliParm, a python program that provides the conformational analysis of Martini-based coarse-grained double strand DNA molecules. The software calculates the helical parameters such as base, base pair and base pair step parameters. cgHeliParm can be used for the analysis of coarse grain Martini molecular dynamics trajectories without transformation into atomistic models.
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