4.7 Article

Phandango: an interactive viewer for bacterial population genomics

Journal

BIOINFORMATICS
Volume 34, Issue 2, Pages 292-293

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx610

Keywords

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Funding

  1. Wellcome Trust [098051, 104169/Z/14/Z, 099202]
  2. Sir Henry Dale Fellowship
  3. Royal Society [104169/Z/14/Z]
  4. Centre for Genomic Pathogen Surveillance
  5. Medical Research Council [MR/K010174/1B] Funding Source: researchfish
  6. National Institute for Health Research [HPRU-2012-10080] Funding Source: researchfish
  7. Wellcome Trust [104169/Z/14/Z] Funding Source: researchfish

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Fully exploiting the wealth of data in current bacterial population genomics datasets requires synthesizing and integrating different types of analysis across millions of base pairs in hundreds or thousands of isolates. Current approaches often use static representations of phylogenetic, epidemiological, statistical and evolutionary analysis results that are difficult to relate to one another. Phandango is an interactive application running in a web browser allowing fast exploration of large-scale population genomics datasets combining the output from multiple genomic analysis methods in an intuitive and interactive manner.

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