Related references
Note: Only part of the references are listed.Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability
Pascal Leuenberger et al.
SCIENCE (2017)
Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules
Hahnbeom Park et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)
Accurate de novo design of hyperstable constrained peptides
Gaurav Bhardwaj et al.
NATURE (2016)
The coming of age of de novo protein design
Po-Ssu Huang et al.
NATURE (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
Vikram Alva et al.
NUCLEIC ACIDS RESEARCH (2016)
Protein engineering by highly parallel screening of computationally designed variants
Mark G. F. Sun et al.
SCIENCE ADVANCES (2016)
Protein stability: computation, sequence statistics, and new experimental methods
Thomas J. Magliery
CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)
Fluorescence Correlation Spectroscopy Reveals Highly Efficient Cytosolic Delivery of Certain Penta-Arg Proteins and Stapled Peptides
Jonathan R. LaRochelle et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2015)
Local and macroscopic electrostatic interactions in single α-helices
Emily G. Baker et al.
NATURE CHEMICAL BIOLOGY (2015)
Control over overall shape and size in de novo designed proteins
Yu-Ru Lin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Tertiary Structural Propensities Reveal Fundamental Sequence/Structure Relationships
Fan Zheng et al.
STRUCTURE (2015)
Quantitative proteomics reveals the kinetics of trypsin-catalyzed protein digestion
Yanbo Pan et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2014)
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang et al.
BIOINFORMATICS (2014)
Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations
Stefano Piana et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)
Forces stabilizing proteins
C. Nick Pace et al.
FEBS LETTERS (2014)
Folding Simulations for Proteins with Diverse Topologies Are Accessible in Days with a Physics-Based Force Field and Implicit Solvent
Hai Nguyen et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Large-scale de novo DNA synthesis: technologies and applications
Sriram Kosuri et al.
NATURE METHODS (2014)
Contribution of hydrogen bonds to protein stability
C. Nick Pace et al.
PROTEIN SCIENCE (2014)
Fast protein folding kinetics
Hannah Gelman et al.
QUARTERLY REVIEWS OF BIOPHYSICS (2014)
Energy Functions in De Novo Protein Design: Current Challenges and Future Prospects
Zhixiu Li et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 42 (2013)
Navigating the protein fitness landscape with Gaussian processes
Philip A. Romero et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Rational modification of protein stability by targeting surface sites leads to complicated results
Shifeng Xiao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Arginine Topology Controls Escape of Minimally Cationic Proteins from Early Endosomes to the Cytoplasm
Jacob S. Appelbaum et al.
CHEMISTRY & BIOLOGY (2012)
Principles for designing ideal protein structures
Nobuyasu Koga et al.
NATURE (2012)
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
Michael Remmert et al.
NATURE METHODS (2012)
Protein folding kinetics and thermodynamics from atomistic simulation
Stefano Piana et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
Carlos L. Araya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Structural Basis for the Versatile Interactions of Smad7 with Regulator WW Domains in TGF-β Pathways
Eric Aragon et al.
STRUCTURE (2012)
Accelerated NMR Spectroscopy by Using Compressed Sensing
Krzysztof Kazimierczuk et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)
A novel strategy for NMR resonance assignment and protein structure determination
Alexander Lemak et al.
JOURNAL OF BIOMOLECULAR NMR (2011)
Contribution of Hydrophobic Interactions to Protein Stability
C. Nick Pace et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
Po-Ssu Huang et al.
PLOS ONE (2011)
How Fast-Folding Proteins Fold
Kresten Lindorff-Larsen et al.
SCIENCE (2011)
Learning Bayesian Networks with the bnlearn R Package
Marco Scutari
JOURNAL OF STATISTICAL SOFTWARE (2010)
An improved yeast transformation method for the generation of very large human antibody libraries
Lorenzo Benatuil et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2010)
De Novo Design of a beta alpha beta Motif
Huanhuan Liang et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)
Analysis of Core Packing in a Cooperatively Folded Miniature Protein: The Ultrafast Folding Villin Headpiece Helical Subdomain
Shifeng Xiao et al.
BIOCHEMISTRY (2009)
The Folding Mechanism of BBL: Plasticity of Transition-State Structure Observed within an Ultrafast Folding Protein Family
Hannes Neuweiler et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Enzymatic assembly of DNA molecules up to several hundred kilobases
Daniel G. Gibson et al.
NATURE METHODS (2009)
Sequence determinants of thermodynamic stability in a WW domain-An all-β-sheet protein
Marcus Jaeger et al.
PROTEIN SCIENCE (2009)
Sequence specific resonance assignment via Multicanonical Monte Carlo search using an ABACUS approach
Alexander Lemak et al.
JOURNAL OF BIOMOLECULAR NMR (2008)
Energetics-based protein profiling on a proteomic scale: Identification of proteins resistant to proteolysis
Chiwook Park et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Improving catalytic function by ProSAR-driven enzyme evolution
Richard J. Fox et al.
NATURE BIOTECHNOLOGY (2007)
Evaluating protein structures determined by structural genomics consortia
Aneerban Bhattacharya et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Structure-function-folding relationship in a WW domain
Marcus Jaeger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
An expanded WW domain recognition motif revealed by the interaction between Smad7 and the E3 ubiquitin ligase Smurf2
P. Andrew Chong et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Isolating and engineering human antibodies using yeast surface display
Ginger Chao et al.
NATURE PROTOCOLS (2006)
ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions
M. D. Shaji Kumar et al.
NUCLEIC ACIDS RESEARCH (2006)
Yeast surface display of a noncovalent MHC class II heterodimer complexed with antigenic peptide
ET Boder et al.
BIOTECHNOLOGY AND BIOENGINEERING (2005)
High-resolution crystal structures of villin headpiece and mutants with reduced F-actin binding activity
JM Meng et al.
BIOCHEMISTRY (2005)
Protein production by auto-induction in high-density shaking cultures
FW Studier
PROTEIN EXPRESSION AND PURIFICATION (2005)
Pulse proteolysis: A simple method for quantitative determination of protein stability and ligand binding
CW Park et al.
NATURE METHODS (2005)
De novo proteins from designed combinatorial libraries
MH Hecht et al.
PROTEIN SCIENCE (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Optimizing resolution in multidimensional NMR by three-way decomposition
VY Orekhov et al.
JOURNAL OF BIOMOLECULAR NMR (2003)
Refinement of protein structures in explicit solvent
JP Linge et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis
DM Hoover et al.
NUCLEIC ACIDS RESEARCH (2002)
Increasing protein stability using a rational approach combining sequence homology and structural alignment: Stabilizing the WW domain
X Jiang et al.
PROTEIN SCIENCE (2001)
Prediction of functionally important residues based solely on the computed energetics of protein structure
AH Elcock
JOURNAL OF MOLECULAR BIOLOGY (2001)
Structural basis for phosphoserine-proline recognition by group IVWW domains
MA Verdecia et al.
NATURE STRUCTURAL BIOLOGY (2000)