Related references
Note: Only part of the references are listed.GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Genomic history of the seventh pandemic of cholera in Africa
Francois-Xavier Weill et al.
SCIENCE (2017)
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand
Achiraya Siriphap et al.
PLOS ONE (2017)
Fast Dating Using Least-Squares Criteria and Algorithms
Thu-Hien To et al.
SYSTEMATIC BIOLOGY (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Origins of the current seventh cholera pandemic
Dalong Hu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008
Seon Young Choi et al.
MBIO (2016)
Is El Nino a long-distance corridor for waterborne disease?
Jaime Martinez-Urtaza et al.
NATURE MICROBIOLOGY (2016)
Non-toxigenic environmental Vibrio cholerae O1 strain from Haiti provides evidence of pre-pandemic cholera in Hispaniola
Taj Azarian et al.
SCIENTIFIC REPORTS (2016)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
VIRUS EVOLUTION (2016)
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
Andrew J. Page et al.
MICROBIAL GENOMICS (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
The Dynamics of Genetic Interactions between Vibrio metoecus and Vibrio cholerae, Two Close Relatives Co-Occurring in the Environment
Fabini D. Orata et al.
GENOME BIOLOGY AND EVOLUTION (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
The Role of China in the Global Spread of the Current Cholera Pandemic
Xavier Didelot et al.
PLOS GENETICS (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Genomic and Phenotypic Characterization of Vibrio cholerae Non-O1 Isolates from a US Gulf Coast Cholera Outbreak
Bradd J. Haley et al.
PLOS ONE (2014)
Occurrence in Mexico, 1998-2008, of Vibrio cholerae CTX+ El Tor carrying an additional truncated CTX prophage
Munirul Alam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Acquisition and Evolution of SXT-R391 Integrative Conjugative Elements in the Seventh-Pandemic Vibrio cholerae Lineage
Matteo Spagnoletti et al.
MBIO (2014)
Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic
Mark Eppinger et al.
MBIO (2014)
Epidemic cholera spreads like wildfire
Manojit Roy et al.
SCIENTIFIC REPORTS (2014)
The Population Structure of Vibrio cholerae from the Chandigarh Region of Northern India
Moataz Abd El Ghany et al.
PLOS NEGLECTED TROPICAL DISEASES (2014)
Vibrio ecology, pathogenesis, and evolution
Daniela Ceccarelli et al.
FRONTIERS IN MICROBIOLOGY (2014)
Genome Sequence of Vibrio cholerae Strain O1 Ogawa El Tor, Isolated in Mexico, 2013
Jose Alberto Diaz-Quinonez et al.
GENOME ANNOUNCEMENTS (2014)
Genomic Epidemiology of Vibrio cholerae O1 Associated with Floods, Pakistan, 2010
Muhammad Ali Shah et al.
EMERGING INFECTIOUS DISEASES (2014)
Sequence polymorphisms of rfbT among the Vibrio cholerae O1 strains in the Ogawa and Inaba serotype shifts
Weili Liang et al.
BMC MICROBIOLOGY (2013)
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
Lu Cheng et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
A Study on the Geophylogeny of Clinical and Environmental Vibrio cholerae in Kenya
John Kiiru et al.
PLOS ONE (2013)
Evolutionary Dynamics of Vibrio cholerae O1 following a Single-Source Introduction to Haiti
Lee S. Katz et al.
MBIO (2013)
Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic
Atiqul Islam et al.
OPEN BIOLOGY (2013)
Vibrio cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico
Munirul Alam et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Alexei J. Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Genomic diversity of 2010 Haitian cholera outbreak strains
Nur A. Hasan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Genome Sequence of the Human Pathogen Vibrio cholerae Amazonia
Cristiane C. Thompson et al.
JOURNAL OF BACTERIOLOGY (2011)
Whole genome sequencing of environmental Vibrio cholerae 01 from 10 nanograms of DNA using short reads
Paula Juliana Perez Chaparro et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2011)
Evidence for several waves of global transmission in the seventh cholera pandemic
Ankur Mutreja et al.
NATURE (2011)
The Origin of the Haitian Cholera Outbreak Strain.
Chen-Shan Chin et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak
Rene S. Hendriksen et al.
MBIO (2011)
The Cholera Pandemic, Still with Us after Half a Century: Time to Rethink
Edward T. Ryan
PLOS NEGLECTED TROPICAL DISEASES (2011)
Lessons Learned during Public Health Response to Cholera Epidemic in Haiti and the Dominican Republic
Jordan W. Tappero et al.
EMERGING INFECTIOUS DISEASES (2011)
Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa
Aleisha R. Reimer et al.
EMERGING INFECTIOUS DISEASES (2011)
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
Bradd J. Haley et al.
BMC MICROBIOLOGY (2010)
Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae
Christopher J. Grim et al.
JOURNAL OF BACTERIOLOGY (2010)
Cholera between 1991 and 1997 in Mexico Was Associated with Infection by Classical, El Tor, and El Tor Variants of Vibrio cholerae
Munirul Alam et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
Simon R. Harris et al.
SCIENCE (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Molecular Analyses of Vibrio cholerae O1 Clinical Strains, Including New Nontoxigenic Variants Isolated in Mexico during the Cholera Epidemic Years between 1991 and 2000
Marcial Leonardo Lizarraga-Partida et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2009)
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
Jongsik Chun et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones
Lu Feng et al.
PLOS ONE (2008)
Genetic diversity of Vibrio cholerae O1 in Argentina and emergence of a new variant
M Pichel et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
Effects of global climate on infectious disease: the cholera model
EK Lipp et al.
CLINICAL MICROBIOLOGY REVIEWS (2002)
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
JF Heidelberg et al.
NATURE (2000)
New insights on the emergence of cholera in Latin America during 1991: the Peruvian experience
C Seas et al.
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2000)
Share Paper
