Related references
Note: Only part of the references are listed.1,2-Propanediol Dehydration in Roseburia inulinivorans STRUCTURAL BASIS FOR SUBSTRATE AND ENANTIOMER SELECTIVITY
Joseph W. LaMattina et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
Vikram Alva et al.
NUCLEIC ACIDS RESEARCH (2016)
Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges
Martin J. Blaser et al.
MBIO (2016)
A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide-Reductase
Yifeng Wei et al.
BIOCHEMISTRY (2015)
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks
John A. Gerlt et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2015)
Substrate-bound Structures of Benzylsuccinate Synthase Reveal How Toluene Is Activated in Anaerobic Hydrocarbon Degradation
Michael A. Funk et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Structure and Function of CutC Choline Lyase from Human Microbiota Bacterium Klebsiella pneumoniae
Gints Kalnins et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
A General Strategy for the Discovery of Metabolic Pathways: D-Threitol, L-Threitol, and Erythritol Utilization in Mycobacterium smegmatis
Hua Huang et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2015)
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling
Eric A. Franzosa et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Structural and evolutionary relationships of AT-less type I polyketide synthase ketosynthases
Jeremy R. Lohman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Characterization and Detection of a Widely Distributed Gene Cluster That Predicts Anaerobic Choline Utilization by Human Gut Bacteria
Ana Martinez-del Campo et al.
MBIO (2015)
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
James Kaminski et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
Stephen Nayfach et al.
GENOME BIOLOGY (2015)
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
Baris E. Suzek et al.
BIOINFORMATICS (2015)
The InterPro protein families database: the classification resource after 15 years
Alex Mitchell et al.
NUCLEIC ACIDS RESEARCH (2015)
Characterization of Choline Trimethylamine-Lyase Expands the Chemistry of Glycyl Radical Enzymes
Smaranda Craciun et al.
ACS CHEMICAL BIOLOGY (2014)
Cobalamin-dependent dehydratases and a deaminase: Radical catalysis and reactivating chaperones
Tetsuo Toraya
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2014)
Determining Microbial Products and Identifying Molecular Targets in the Human Microbiome
Regina Joice et al.
CELL METABOLISM (2014)
Transmigrating Neutrophils Shape the Mucosal Microenvironment through Localized Oxygen Depletion to Influence Resolution of Inflammation
Eric L. Campbell et al.
IMMUNITY (2014)
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
Nicole Reichardt et al.
ISME JOURNAL (2014)
Alterations of the human gut microbiome in liver cirrhosis
Nan Qin et al.
NATURE (2014)
Relating the metatranscriptome and metagenome of the human gut
Eric A. Franzosa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Insights into the Glycyl Radical Enzyme Active Site of Benzylsuccinate Synthase: A Computational Study
Vivek S. Bharadwaj et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Urinary p-cresol in autism spectrum disorder
Antonio M. Persico et al.
NEUROTOXICOLOGY AND TERATOLOGY (2013)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
Inference of Functional Properties from Large-scale Analysis of Enzyme Superfamilies
Shoshana D. Brown et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Glycerol Dehydratation by the B12-Independent Enzyme May Not Involve the Migration of a Hydroxyl Group: A Computational Study
Mikolaj Feliks et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
A framework for human microbiome research
Barbara A. Methe et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
Michael Remmert et al.
NATURE METHODS (2012)
Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions
Carolin A. Kolmeder et al.
PLOS ONE (2012)
Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme
Smaranda Craciun et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Host-Gut Microbiota Metabolic Interactions
Jeremy K. Nicholson et al.
SCIENCE (2012)
The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters
Arren Bar-Even et al.
BIOCHEMISTRY (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Zeneng Wang et al.
NATURE (2011)
Modeling the Reactions Catalyzed by Coenzyme B-12-Dependent Enzymes
Gregory M. Sandala et al.
ACCOUNTS OF CHEMICAL RESEARCH (2010)
Proline Metabolism and Microenvironmental Stress
James M. Phang et al.
ANNUAL REVIEW OF NUTRITION, VOL 30 (2010)
Prolyl 4-hydroxylase
Kelly L. Gorres et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2010)
Gut Microbiota in Health and Disease
Inna Sekirov et al.
PHYSIOLOGICAL REVIEWS (2010)
Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families
Kyle Ellrott et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Pyrroloquinoline Quinone Biogenesis: Demonstration That PqqE from Klebsiella pneumoniae Is a Radical S-Adenosyl-L-methionine Enzyme
Stephen R. Wecksler et al.
BIOCHEMISTRY (2009)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies
Holly J. Atkinson et al.
PLOS ONE (2009)
Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism
T. Andrew Clayton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Fast and accurate automatic structure prediction with HHpred
Andrea Hildebrand et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies
Alexandra M. Schnoes et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
Ken Kurokawa et al.
DNA RESEARCH (2007)
Analysis of hydroxyproline isomers and hydroxylysine by reversed-phase HPLC and mass spectrometry
Tobias Langrock et al.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2007)
Analysis of proline reduction in the nosocomial pathogen Clostridium difficile
Sarah Jackson et al.
JOURNAL OF BACTERIOLOGY (2006)
Extra precision glide: Docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes
Richard A. Friesner et al.
JOURNAL OF MEDICINAL CHEMISTRY (2006)
Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice
Marc-Emmanuel Dumas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Whole-genome transcription profiling reveals genes up-regulated by growth on fucose in the human gut bacterium Roseburia inulinivorans
Karen P. Scott et al.
JOURNAL OF BACTERIOLOGY (2006)
Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus
L Lehtiö et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
EasySpin, a comprehensive software package for spectral simulation and analysis in EPR
S Stoll et al.
JOURNAL OF MAGNETIC RESONANCE (2006)
Crystal structures of Δ1-pyrroline-5-carboxylate reductase from human pathogens Neisseria meningitides and Streptococcus pyogenes
B Nocek et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
New glycyl radical enzymes catalysing key. metabolic steps in anaerobic bacteria
T Selmer et al.
BIOLOGICAL CHEMISTRY (2005)
A hierarchical approach to all-atom protein loop prediction
MP Jacobson et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
Insight into the mechanism of the B12-independent glycerol dehydratase from Clostridium butyricum:: Preliminary biochemical and structural characterization
JR O'Brien et al.
BIOCHEMISTRY (2004)
Improved chemical syntheses of 1-and 5-deazariboflavin
EE Carlson et al.
JOURNAL OF ORGANIC CHEMISTRY (2004)
Glide: A new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
RA Friesner et al.
JOURNAL OF MEDICINAL CHEMISTRY (2004)
Glide: A new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening
TA Halgren et al.
JOURNAL OF MEDICINAL CHEMISTRY (2004)
The pyruvate formate lyase family:: sequences, structures and activation
L Lehtiö et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2004)
ExPASy: the proteomics server for in-depth protein knowledge and analysis
E Gasteiger et al.
NUCLEIC ACIDS RESEARCH (2003)
Molecular characterization of the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum
C Raynaud et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin
B Gust et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
On the role of the crystal environment in determining protein side-chain conformations
MP Jacobson et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Highly selective hydrolytic kinetic resolution of terminal epoxides catalyzed by chiral (salen)CoIII complexes.: Practical synthesis of enantioenriched terminal epoxides and 1,2-diols
SE Schaus et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2002)
YfiD of Escherichia coli and Y061 of bacteriophage T4 as autonomous glycyl radical cofactors reconstituting the catalytic center of oxygen-fragmented pyruvate formate-lyase
AFV Wagner et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2001)
p-Hydroxyphenylacetate decarboxylase from Clostridium difficile -: A novel glycyl radical enzyme catalysing the formation of p-cresol
T Selmer et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2001)