Related references
Note: Only part of the references are listed.Nanocall: an open source basecaller for Oxford Nanopore sequencing data
Matei David et al.
BIOINFORMATICS (2017)
Post-transcriptional gene regulation by mRNA modifications
Boxuan Simen Zhao et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition
Boxuan Simen Zhao et al.
NATURE (2017)
Epitranscriptome sequencing technologies: decoding RNA modifications
Xiaoyu Li et al.
NATURE METHODS (2017)
Detecting DNA cytosine methylation using nanopore sequencing
Jared T. Simpson et al.
NATURE METHODS (2017)
Mapping DNA methylation with high-throughput nanopore sequencing
Arthur C. Rand et al.
NATURE METHODS (2017)
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Joshua Quick et al.
NATURE PROTOCOLS (2017)
Detecting RNA modifications in the epitranscriptome: predict and validate
Mark Helm et al.
NATURE REVIEWS GENETICS (2017)
RNA PROCESSING AND MODIFICATIONS Charting the unknown epitranscriptome
Eva Maria Novoa et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
Lost in Translation: Defects in Transfer RNA Modifications and Neurological Disorders
Andrea Bednarova et al.
FRONTIERS IN MOLECULAR NEUROSCIENCE (2017)
DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads
Vladimir Boza et al.
PLOS ONE (2017)
Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder
Qi Chen et al.
SCIENCE (2016)
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
Upasna Sharma et al.
SCIENCE (2016)
The emerging epitranscriptomics of long noncoding RNAs
Andrew Shafik et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)
ALKBH1-Mediated tRNA Demethylation Regulates Translation (vol 167, pg 816, 2016)
Fange Liu et al.
CELL (2016)
Elp3 links tRNA modification to IRES-dependent translation of LEF1 to sustain metastasis in breast cancer
Sylvain Delaunay et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2016)
m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination
Irmgard U. Haussmann et al.
NATURE (2016)
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick et al.
NATURE (2016)
m6A modulates neuronal functions and sex determination in Drosophila
Tina Lence et al.
NATURE (2016)
The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
Dan Dominissini et al.
NATURE (2016)
Evolving insights into RNA modifications and their functional diversity in the brain
Sarah Nainar et al.
NATURE NEUROSCIENCE (2016)
RNA modifications: what have we learned and where are we headed?
Michaela Frye et al.
NATURE REVIEWS GENETICS (2016)
tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast
Roland Klassen et al.
NUCLEIC ACIDS RESEARCH (2016)
Transcriptome-wide distribution and function of RNA hydroxymethylcytosine
Benjamin Delatte et al.
SCIENCE (2016)
Messenger RNA modifications: Form, distribution, and function
Wendy V. Gilbert et al.
SCIENCE (2016)
RNA Editing: A Contributor to Neuronal Dynamics in the Mammalian Brain
Mikaela Behm et al.
TRENDS IN GENETICS (2016)
Oxford Nanopore MinION Sequencing and Genome Assembly
Hengyun Lu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
The origin of the ADAR gene family and animal RNA editing
Laura F. Grice et al.
BMC EVOLUTIONARY BIOLOGY (2015)
Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity
Danny D. Nedialkova et al.
CELL (2015)
N6-methyladenosine Modulates Messenger RNA Translation Efficiency
Xiao Wang et al.
CELL (2015)
A cautionary tale: the non-causal association between type 2 diabetes risk SNP, rs7756992, and levels of non-coding RNA, CDKAL1-v1
Jonathan M. Locke et al.
DIABETOLOGIA (2015)
An association study of the m6A genes with major depressive disorder in Chinese Han population
Tingfu Du et al.
JOURNAL OF AFFECTIVE DISORDERS (2015)
Successful test launch for nanopore sequencing
Nicholas J. Loman et al.
NATURE METHODS (2015)
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
Bastian Linder et al.
NATURE METHODS (2015)
A complete bacterial genome assembled de novo using only nanopore sequencing data
Nicholas J. Loman et al.
NATURE METHODS (2015)
Improved data analysis for the MinION nanopore sequencer
Miten Jain et al.
NATURE METHODS (2015)
Autophagy in spinal motor neurons of conditional ADAR2-knockout mice: An implication for a role of calcium in increased autophagy flux in ALS
Soichi Sasaki et al.
NEUROSCIENCE LETTERS (2015)
FTO Obesity Variant Circuitry and Adipocyte Browning in Humans
Melina Claussnitzer et al.
NEW ENGLAND JOURNAL OF MEDICINE (2015)
The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent
Ralf Hauenschild et al.
NUCLEIC ACIDS RESEARCH (2015)
RNA modification: the Golden Period 1995-2015
Henri Grosjean
RNA (2015)
Profiling RNA editing in human tissues: towards the inosinome Atlas
Ernesto Picardi et al.
SCIENTIFIC REPORTS (2015)
Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation
Wenjun Deng et al.
PLOS GENETICS (2015)
Modulation of microRNA editing, expression and processing by ADAR2 deaminase in glioblastoma
Sara Tomaselli et al.
GENOME BIOLOGY (2015)
PacBio Sequencing and Its Applications
Anthony Rhoads et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
The Role of a Novel TRMT1 Gene Mutation and Rare GRM1 Gene Defect in Intellectual Disability in Two Azeri Families
Behzad Davarniya et al.
PLOS ONE (2015)
An evolutionary approach uncovers a diverse response of tRNA 2-thiolation to elevated temperatures in yeast
Fiona Alings et al.
RNA (2015)
Functional importance of Ψ38 and Ψ39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast
Lu Han et al.
RNA (2015)
Contribution of CDKAL1 rs7756992 and IGF2BP2 rs4402960 polymorphisms in type 2 diabetes, diabetic complications, obesity risk and hypertension in the Tunisian population
Khaled Lasram et al.
JOURNAL OF DIABETES (2015)
Mutation in WDR4 impairs tRNA m7G46 methylation and causes a distinct form of microcephalic primordial dwarfism
Ranad Shaheen et al.
GENOME BIOLOGY (2015)
The Pivotal Regulatory Landscape of RNA Modifications
Sheng Li et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 15 (2014)
Association Analysis of IGF2BP2, KCNJ11, and CDKAL1 Polymorphisms with Type 2 Diabetes Mellitus in a Moroccan Population: A Case-Control Study and Meta-analysis
Houda Benrahma et al.
BIOCHEMICAL GENETICS (2014)
Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
Schraga Schwartz et al.
CELL (2014)
m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells
Pedro J. Batista et al.
CELL STEM CELL (2014)
A System of RNA Modifications and Biased Codon Use Controls Cellular Stress Response at the Level of Translation
Peter C. Dedon et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2014)
Posttranscriptional RNA Modifications: Playing Metabolic Games in a Cell's Chemical Legoland
Mark Helm et al.
CHEMISTRY & BIOLOGY (2014)
Whole exome sequencing unravels disease-causing genes in consanguineous families in Qatar
S. Fahiminiya et al.
CLINICAL GENETICS (2014)
Dynamic RNA modifications in disease
Arne Klungland et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)
Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
Sandra Blanco et al.
EMBO JOURNAL (2014)
Dynamic RNA Modifications in Posttranscriptional Regulation
Xiao Wang et al.
MOLECULAR CELL (2014)
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
Thomas M. Carlile et al.
NATURE (2014)
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
Yang Wang et al.
NATURE CELL BIOLOGY (2014)
Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry
Dan Su et al.
NATURE PROTOCOLS (2014)
The rise of regulatory RNA
Kevin V. Morris et al.
NATURE REVIEWS GENETICS (2014)
Hippocampus-specific deficiency in RNA editing of GluA2 in Alzheimer's disease
Inna Gaisler-Salomon et al.
NEUROBIOLOGY OF AGING (2014)
Modify or die? - RNA modification defects in metazoans
L. Peter Sarin et al.
RNA BIOLOGY (2014)
Rational experiment design for sequencing-based RNA structure mapping
Sharon Aviran et al.
RNA (2014)
Chemical Inhibition of NAT10 Corrects Defects of Laminopathic Cells
Delphine Larrieu et al.
SCIENCE (2014)
Role of tRNA modifications in human diseases
Adrian Gabriel Torres et al.
TRENDS IN MOLECULAR MEDICINE (2014)
Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
Schraga Schwartz et al.
CELL REPORTS (2014)
A High-Throughput Quantitative Approach Reveals More Small RNA Modifications in Mouse Liver and Their Correlation with Diabetes
Menghong Yan et al.
ANALYTICAL CHEMISTRY (2013)
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
Schraga Schwartz et al.
CELL (2013)
RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock
Jean-Michel Fustin et al.
CELL (2013)
A human tRNA methyltransferase 9-like protein prevents tumour growth by regulating LIN9 and HIF1-α
Ulrike Begley et al.
EMBO MOLECULAR MEDICINE (2013)
Expression of NOL1/NOP2/sun domain (Nsun) RNA methyltransferase family genes in early mouse embryogenesis
Lijun Chi et al.
GENE EXPRESSION PATTERNS (2013)
ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
Guanqun Zheng et al.
MOLECULAR CELL (2013)
Identification of direct targets and modified bases of RNA cytosine methyltransferases
Vahid Khoddami et al.
NATURE BIOTECHNOLOGY (2013)
Identifying RNA editing sites using RNA sequencing data alone
Gokul Ramaswami et al.
NATURE METHODS (2013)
DNA methylation regulates associative reward learning
Jeremy J. Day et al.
NATURE NEUROSCIENCE (2013)
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry
Martin E. Hess et al.
NATURE NEUROSCIENCE (2013)
Structure and function of long noncoding RNAs in epigenetic regulation
Tim R. Mercer et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
MODOMICS: a database of RNA modification pathways-2013 update
Magdalena A. Machnicka et al.
NUCLEIC ACIDS RESEARCH (2013)
Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage
Pierre B. Cattenoz et al.
RNA (2013)
HAMR: high-throughput annotation of modified ribonucleotides
Paul Ryvkin et al.
RNA (2013)
Loss of a Conserved tRNA Anticodon Modification Perturbs Cellular Signaling
Boris Zinshteyn et al.
PLOS GENETICS (2013)
Characterizing 5-methylcytosine in the mammalian epitranscriptome
Shobbir Hussain et al.
GENOME BIOLOGY (2013)
Mutations in NSUN2 Cause Autosomal-Recessive Intellectual Disability
Lia Abbasi-Moheb et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2012)
Method for Comparative Analysis of Ribonucleic Acids Using Isotope Labeling and Mass Spectrometry
Siwei Li et al.
ANALYTICAL CHEMISTRY (2012)
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
Kate D. Meyer et al.
CELL (2012)
Whole exome sequencing identifies a splicing mutation in NSUN2 as a cause of a Dubowitz-like syndrome
Fernando Jose Martinez et al.
JOURNAL OF MEDICAL GENETICS (2012)
Landscape of transcription in human cells
Sarah Djebali et al.
NATURE (2012)
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
Dan Dominissini et al.
NATURE (2012)
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
Francesca Tuorto et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Profound downregulation of the RNA editing enzyme ADAR2 in ALS spinal motor neurons
Takuto Hideyama et al.
NEUROBIOLOGY OF DISEASE (2012)
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
Jeffrey E. Squires et al.
NUCLEIC ACIDS RESEARCH (2012)
Translational infidelity-induced protein stress results from a deficiency in Trm9-catalyzed tRNA modifications
Ashish Patil et al.
RNA BIOLOGY (2012)
The birth of the Epitranscriptome: deciphering the function of RNA modifications
Yogesh Saletore et al.
GENOME BIOLOGY (2012)
The central role of RNA in human development and cognition
John S. Mattick
FEBS LETTERS (2011)
Detecting low-level synthesis impurities in modified phosphorothioate oligonucleotides using liquid chromatography-high resolution mass spectrometry
Irena Nikcevic et al.
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2011)
Mass Spectrometry-Based Quantification of Pseudouridine in RNA
Balasubrahmanyam Addepalli et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2011)
Deep sequencing reveals 50 novel genes for recessive cognitive disorders
Hossein Najmabadi et al.
NATURE (2011)
N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
Guifang Jia et al.
NATURE CHEMICAL BIOLOGY (2011)
The RNA modification database, RNAMDB: 2011 update
William A. Cantara et al.
NUCLEIC ACIDS RESEARCH (2011)
RNA as the substrate for epigenome-environment interactions
John S. Mattick
BIOESSAYS (2010)
Long non-coding RNAs in nervous system function and disease
Irfan A. Qureshi et al.
BRAIN RESEARCH (2010)
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
Julian Koenig et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates
Nurit Paz-Yaacov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Spliceosomal snRNA modifications and their function
John Karijolich et al.
RNA BIOLOGY (2010)
RNA metabolism and the pathogenesis of motor neuron diseases
Robin Lemmens et al.
TRENDS IN NEUROSCIENCES (2010)
A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress
Clement T. Y. Chan et al.
PLOS GENETICS (2010)
Mutation of a Gene Essential for Ribosome Biogenesis, EMG1, Causes Bowen-Conradi Syndrome
Joy Armistead et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2009)
An Association Study of 45 Folate-Related Genes in Spina Bifida: Involvement of Cubilin (CUBN) and tRNA Aspartic Acid Methyltransferase 1 (TRDMT1)
Barbara Franke et al.
BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY (2009)
RNA cytosine methylation analysis by bisulfite sequencing
Matthias Schaefer et al.
NUCLEIC ACIDS RESEARCH (2009)
RNA editing, DNA recoding and the evolution of human cognition
John S. Mattick et al.
TRENDS IN NEUROSCIENCES (2008)
Use of DNAzymes for site-specific analysis of ribonucleotide modifications
Martin Hengesbach et al.
RNA (2008)
Chromosome 8 BAC array comparative genomic hybridization and expression analysis identify amplification and overexpression of TRMT12 in breast cancer
Virginia Rodriguez et al.
GENES CHROMOSOMES & CANCER (2007)
Determination of the 'critical region' for cat-like cry of Cri-du-chat syndrome and analysis of candidate genes by quantitative PCR
QF Wu et al.
EUROPEAN JOURNAL OF HUMAN GENETICS (2005)
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G
SL Sawyer et al.
PLOS BIOLOGY (2004)
Mutations in the FTSJ1 gene coding for a novel S-adenosylmethionine- binding protein cause nonsyndromic X-linked mental retardation
K Freude et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2004)
Detection and quantitation of RNA base modifications
XL Zhao et al.
RNA (2004)
Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome
A Doll et al.
CYTOGENETICS AND CELL GENETICS (2001)
A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains
CX Chen et al.
RNA (2000)