Journal
BIOINFORMATICS
Volume 34, Issue 5, Pages 890-892Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btx477
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Funding
- European Commission (FGENTCARD) [LSHG-CT-2006-037683]
- La Caixa studentship
- British Heart Foundation [RG/15/5/31446]
- FCT [BD/52036/2012]
- Imperial College scholarship [EP/M506345/1]
- BHF Chair [CH/15/31199]
- Medical Research Council Doctoral Training Centre scholarship [MR/K501281/1]
- MRC [MC_U120097112] Funding Source: UKRI
- British Heart Foundation [RG/15/5/31446] Funding Source: researchfish
- Medical Research Council [1583045, MC_U120097112] Funding Source: researchfish
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MWASTools is an R package designed to provide an integrated pipeline to analyse metabonomic data in large-scale epidemiological studies. Key functionalities of our package include: quality control analysis; metabolome-wide association analysis using various models (partial correlations, generalized linear models); visualization of statistical outcomes; metabolite assignment using statistical total correlation spectroscopy (STOCSY); and biological interpretation of metabolome-wide association studies results. The MWASTools R package is implemented in R (version > =3.4) and is available from Bioconductor: https://bioconductor.org/packages/MWASTools/.
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