4.3 Article

Protein structure prediction using Rosetta in CASP12

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Protein structure determination using metagenome sequence data

Sergey Ovchinnikov et al.

SCIENCE (2017)

Article Biochemistry & Molecular Biology

CASP11 refinement experiments with ROSETTA

Hahnbeom Park et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)

Article Chemistry, Physical

Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules

Hahnbeom Park et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)

Article Biochemistry & Molecular Biology

Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11

Sergey Ovchinnikov et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta

Sergey Ovchinnikov et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)

Article Multidisciplinary Sciences

Accelerating molecular simulations of proteins using Bayesian inference on weak information

Alberto Perez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Relaxation of backbone bond geometry improves protein energy landscape modeling

Patrick Conway et al.

PROTEIN SCIENCE (2014)

Article Chemistry, Physical

Protein Structure Refinement through Structure Selection and Averaging from Molecular Dynamics Ensembles

Vahid Mirjalili et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Biochemical Research Methods

Improved low-resolution crystallographic refinement with Phenix and Rosetta

Frank DiMaio et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era

Hetunandan Kamisetty et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

High-Resolution Comparative Modeling with RosettaCM

Yifan Song et al.

STRUCTURE (2013)

Article Biochemical Research Methods

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

Michael Remmert et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Accelerated Profile HMM Searches

Sean R. Eddy

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

Protein homology detection by HMM-HMM comparison

J Söding

BIOINFORMATICS (2005)

Article Biochemical Research Methods

The PSIPRED protein structure prediction server

LJ McGuffin et al.

BIOINFORMATICS (2000)