4.6 Article

Percolation in protein sequence space

Related references

Note: Only part of the references are listed.
Article Microbiology

Network Analysis of Sequence-Function Relationships and Exploration of Sequence Space of TEM β-Lactamases

Catharina Zeil et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)

Review Biochemistry & Molecular Biology

Ancestral protein reconstruction: techniques and applications

Rainer Merkl et al.

BIOLOGICAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Identification of imine reductase-specific sequence motifs

Silvia Fademrecht et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Identification of universal selectivity-determining positions in cytochrome P450 monooxygenases by systematic sequence-based literature mining

Lukasz Gricman et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)

Article Multidisciplinary Sciences

Evolution on neutral networks accelerates the ticking rate of the molecular clock

Susanna Manrubia et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The modular structure of ThDP-dependent enzymes

Constantin Vogel et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Classification and nomenclature of the superfamily of short-chain dehydrogenases/reductases (SDRs)

Bengt Persson et al.

CHEMICO-BIOLOGICAL INTERACTIONS (2013)

Article Biochemistry & Molecular Biology

ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree

Nadav Rappoport et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biotechnology & Applied Microbiology

Transaminases for the synthesis of enantiopure beta-amino acids

Jens Rudat et al.

AMB EXPRESS (2012)

Article Biochemistry & Molecular Biology

Progress in tracing the evolutionary paths of cytochrome P450

David R. Nelson

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

How much of protein sequence space has been explored by life on Earth?

David T. F. Dryden et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2008)

Article Biology

Walking through protein sequence space

Zakharia M. Frenkel et al.

JOURNAL OF THEORETICAL BIOLOGY (2007)

Review Biochemistry & Molecular Biology

Enzyme promiscuity: evolutionary and mechanistic aspects

Olga Khersonsky et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2006)

Review Biochemistry & Molecular Biology

Protein families and their evolution - A structural perspective

CA Orengo et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2005)

Review Genetics & Heredity

Resurrecting ancient genes: experimental analysis of extinct molecules

JW Thornton

NATURE REVIEWS GENETICS (2004)

Article Biophysics

Protein evolution within a structural space

EJ Deeds et al.

BIOPHYSICAL JOURNAL (2003)

Article Biochemistry & Molecular Biology

Protein families and TRIBES in genome sequence space

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Multidisciplinary Sciences

The structure of the protein universe and genome evolution

EV Koonin et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

Lipase engineering database - Understanding and exploiting sequence-structure-function relationships

J Pleiss et al.

JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC (2000)