Related references
Note: Only part of the references are listed.Comparative epigenomics: a powerful tool to understand the evolution of DNA methylation
Xuehua Zhong
NEW PHYTOLOGIST (2016)
Epigenetic regulation of MdMYB1 is associated with paper bagging-induced red pigmentation of apples
Songling Bai et al.
PLANTA (2016)
Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
Bo Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
DNA methylome of the 20-gigabase Norway spruce genome
Israel Ausin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana
Dazhe Meng et al.
PLOS GENETICS (2016)
Widespread natural variation of DNA methylation within angiosperms
Chad E. Niederhuth et al.
GENOME BIOLOGY (2016)
Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm
Meilina Ong-Abdullah et al.
NATURE (2015)
Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development
Mei-Qing Xing et al.
PLANT PHYSIOLOGY (2015)
Physiological and proteome analysis suggest critical roles for the photosynthetic system for high water-use efficiency under drought stress in Malus
Shasha Zhou et al.
PLANT SCIENCE (2015)
The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice
Ning Zhu et al.
PLANT SCIENCE (2015)
Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression
Jie Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
Irina Makarevitch et al.
PLOS GENETICS (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Single-base-resolution methylomes of populus trichocarpa reveal the association between DNA methylation and drought stress
Dan Liang et al.
BMC GENETICS (2014)
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Sebastien A. Smallwood et al.
NATURE METHODS (2014)
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
Marjori A. Matzke et al.
NATURE REVIEWS GENETICS (2014)
Genetic Perturbation of the Maize Methylome
Qing Li et al.
PLANT CELL (2014)
Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
Danelle K. Seymour et al.
PLOS GENETICS (2014)
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
Jonathan I. Gent et al.
GENOME RESEARCH (2013)
Genome-Wide Analysis of DNA Methylation in Soybean
Qing-Xin Song et al.
MOLECULAR PLANT (2013)
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
Silin Zhong et al.
NATURE BIOTECHNOLOGY (2013)
Epigenetic mechanisms of plant stress responses and adaptation
Pranav Pankaj Sahu et al.
PLANT CELL REPORTS (2013)
The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear
Zhigang Wang et al.
PLANT PHYSIOLOGY (2013)
Global Epigenomic Reconfiguration During Mammalian Brain Development
Ryan Lister et al.
SCIENCE (2013)
Epigenetic regulation of adaptive responses of forest tree species to the environment
Katharina Braeutigam et al.
ECOLOGY AND EVOLUTION (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Programming of DNA Methylation Patterns
Howard Cedar et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 81 (2012)
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
Xin Li et al.
BMC GENOMICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Widespread dynamic DNA methylation in response to biotic stress
Robert H. Dowen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Transcriptome and methylome interactions in rice hybrids
Ramakrishna K. Chodavarapu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
DNA methylation in higher plants: Past, present and future
Boris F. Vanyushin et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2011)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Apple skin patterning is associated with differential expression of MYB10
Adriana Telias et al.
BMC PLANT BIOLOGY (2011)
Epigenetic contribution to stress adaptation in plants
Marie Mirouze et al.
CURRENT OPINION IN PLANT BIOLOGY (2011)
Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)
Wen-Sheng Wang et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
Dwarf apple MbDREB1 enhances plant tolerance to low temperature, drought, and salt stress via both ABA-dependent and ABA-independent pathways
Wei Yang et al.
PLANTA (2011)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
Stress-induced DNA methylation changes and their heritability in asexual dandelions
Koen J. F. Verhoeven et al.
NEW PHYTOLOGIST (2010)
Reactivation of a silenced minimal Mutator transposable element system following low-energy nitrogen ion implantation in maize
Yexiong Qian et al.
PLANT CELL REPORTS (2010)
Research on plant abiotic stress responses in the post-genome era: past, present and future
Takashi Hirayama et al.
PLANT JOURNAL (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Drought tolerance in Arabidopsis is controlled by the OCP3 disease resistance regulator
Vicente Ramirez et al.
PLANT JOURNAL (2009)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn J. Cokus et al.
NATURE (2008)
KEGG for linking genomes to life and the environment
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2008)
DNA demethylation in the Arabidopsis genome
Jon Penterman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
Kenneth Manning et al.
NATURE GENETICS (2006)
The temperature-dependent change in methylation of the Antirrhinum transposon Tam3 is controlled by the activity of its transposase
SN Hashida et al.
PLANT CELL (2006)
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
XZ Mao et al.
BIOINFORMATICS (2005)
Gardening the genome:: DNA methylation in Arabidopsis thaliana
SWL Chan et al.
NATURE REVIEWS GENETICS (2005)
MAPMAN:: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
O Thimm et al.
PLANT JOURNAL (2004)
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3
AM Lindroth et al.
EMBO JOURNAL (2004)
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
ZH Gong et al.
CELL (2002)
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis
YH Choi et al.
CELL (2002)
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
JP Jackson et al.
NATURE (2002)
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
AM Lindroth et al.
SCIENCE (2001)
Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells
N Steward et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
