4.6 Article

Minimum requirements for changing and maintaining endodermis cell identity in the Arabidopsis root

Journal

NATURE PLANTS
Volume 4, Issue 8, Pages 586-595

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/s41477-018-0213-y

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Funding

  1. NIH [R01-GM043778]
  2. Howard Hughes Medical Institute
  3. Gordon and Betty Moore Foundation [GBMF3405]
  4. ERC [616228-ENDOFUN]
  5. SNSF [31003A_156261]
  6. EMBO short-term fellowship
  7. University of Delaware
  8. FEBS long-term fellowship
  9. IEF Marie Curie fellowship
  10. Swiss National Science Foundation (SNF) [31003A_156261] Funding Source: Swiss National Science Foundation (SNF)

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Changes in gene regulation during differentiation are governed by networks of transcription factors. The Arabidopsis root endodermis is a tractable model to address how transcription factors contribute to differentiation. We used a bottom-up approach to understand the extent to which transcription factors that are required for endodermis differentiation can confer endodermis identity to a non-native cell type. Our results show that the transcription factors SHORTROOT and MYB36 alone have limited ability to induce ectopic endodermal features in the absence of additional cues. The stele-derived signalling peptide CIF2 stabilizes SHORTROOT-induced endodermis identity acquisition. The outcome is a partially impermeable barrier deposited in the subepidermal cell layer, which has a transcriptional signature similar to the endodermis. These results demonstrate that other root cell types can be forced to differentiate into the endodermis and highlight a previously unappreciated role for receptor kinase signalling in maintaining endodermis identity.

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