Related references
Note: Only part of the references are listed.Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro et al.
NATURE METHODS (2017)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
A survey of best practices for RNA-seq data analysis
Ana Conesa et al.
GENOME BIOLOGY (2016)
TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs
Juntao Liu et al.
GENOME BIOLOGY (2016)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Leveraging transcript quantification for fast computation of alternative splicing profiles
Gael P. Alamancos et al.
RNA (2015)
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
Rob Patro et al.
NATURE BIOTECHNOLOGY (2014)
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Shihao Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Global Splicing Pattern Reversion during Somatic Cell Reprogramming
Sho Ohta et al.
CELL REPORTS (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
Wei Li et al.
BIOINFORMATICS (2012)
Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data
Boyko Kakaradov et al.
BMC BIOINFORMATICS (2012)
Modelling and simulating generic RNA-Seq experiments with the flux simulator
Thasso Griebel et al.
NUCLEIC ACIDS RESEARCH (2012)
MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data
Shihao Shen et al.
NUCLEIC ACIDS RESEARCH (2012)
The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
Nuno L. Barbosa-Morais et al.
SCIENCE (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Regulation of alternative splicing by the core spliceosomal machinery
Arneet L. Saltzman et al.
GENES & DEVELOPMENT (2011)
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly
Wei Li et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2011)
Computational methods for transcriptome annotation and quantification using RNA-seq
Manuel Garber et al.
NATURE METHODS (2011)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Yarden Katz et al.
NATURE METHODS (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
Cancer-associated regulation of alternative splicing
Julian P. Venables et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Share Paper
