4.7 Review

The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis

Related references

Note: Only part of the references are listed.
Article Microbiology

Secreted tryptophanyl-tRNA synthetase as a primary defence system against infection

Young Ha Ahn et al.

NATURE MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

EPRS is a critical mTORC1-S6K1 effector that influences adiposity in mice

Abul Arif et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

Temperature dependent mistranslation in a hyperthermophile adapts proteins to lower temperatures

Michael H. Schwartz et al.

NUCLEIC ACIDS RESEARCH (2016)

Correction Biochemistry & Molecular Biology

ALKBH1-Mediated tRNA Demethylation Regulates Translation (vol 167, pg 816, 2016)

Fange Liu et al.

Article Biochemistry & Molecular Biology

Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression

Hani Goodarzi et al.

Article Biochemistry & Molecular Biology

Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition

Ariel A. Bazzini et al.

EMBO JOURNAL (2016)

Article Chemistry, Multidisciplinary

Evolutionary Gain of Alanine Mischarging to Noncognate tRNAs with a G4:U69 Base Pair

Litao Sun et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2016)

Article Multidisciplinary Sciences

Stem cell function and stress response are controlled by protein synthesis

Sandra Blanco et al.

NATURE (2016)

Article Multidisciplinary Sciences

Mastering the game of Go with deep neural networks and tree search

David Silver et al.

NATURE (2016)

Review Genetics & Heredity

Epigenetic inheritance of acquired traits through sperm RNAs and sperm RNA modifications

Qi Chen et al.

NATURE REVIEWS GENETICS (2016)

Article Biochemistry & Molecular Biology

YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression

Shawn M. Lyons et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers

Ling-Ling Zheng et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Translation quality control is critical for bacterial responses to amino acid stress

Tammy J. Bullwinkle et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Dysregulation of a family of short noncoding RNAs, tsRNAs, in human cancer

Yuri Pekarsky et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

tRNA base methylation identification and quantification via high-throughput sequencing

Wesley C. Clark et al.

Review Biochemistry & Molecular Biology

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs)

Pankaj Kumar et al.

TRENDS IN BIOCHEMICAL SCIENCES (2016)

Review Biochemistry & Molecular Biology

Small RNA Modifications: Integral to Function and Disease

Xudong Zhang et al.

TRENDS IN MOLECULAR MEDICINE (2016)

Article Multidisciplinary Sciences

tRNA-mediated codon-biased translation in mycobacterial hypoxic persistence

Yok Hian Chionh et al.

NATURE COMMUNICATIONS (2016)

Article Genetics & Heredity

Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States

Konrad L. M. Rudolph et al.

PLOS GENETICS (2016)

Article Multidisciplinary Sciences

Saturation of recognition elements blocks evolution of new tRNA identities

Adelaide Saint-Leger et al.

SCIENCE ADVANCES (2016)

Article Multidisciplinary Sciences

tRNA-Derived Small Non-Coding RNAs in Response to Ischemia Inhibit Angiogenesis

Qing Li et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

Identification of aberrant tRNA-halves expression patterns in clear cell renal cell carcinoma

Malin Nientiedt et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement

Hani Goodarzi et al.

Article Biochemistry & Molecular Biology

Codon Optimality Is a Major Determinant of mRNA Stability

Vladimir Presnyak et al.

Article Cell Biology

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome

Jeremy M. Shea et al.

DEVELOPMENTAL CELL (2015)

Article Biochemical Research Methods

Efficient and quantitative high-throughput tRNA sequencing

Guanqun Zheng et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome

Bastian Linder et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Protein mistranslation protects bacteria against oxidative stress

Yongqiang Fan et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers

Shozo Honda et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Genetics & Heredity

RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification

Aneeshkumar G. Arimbasseri et al.

PLOS GENETICS (2015)

Review Genetics & Heredity

Emerging roles of tRNA in adaptive translation, signalling dynamics and disease

Sebastian Kirchner et al.

NATURE REVIEWS GENETICS (2015)

Article Biochemistry & Molecular Biology

Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders

Sandra Blanco et al.

EMBO JOURNAL (2014)

Article Genetics & Heredity

tRNA gene copy number variation in humans

James R. Iben et al.

Article Urology & Nephrology

Conformational Change in Transfer RNA Is an Early Indicator of Acute Cellular Damage

Eikan Mishima et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2014)

Article Biochemistry & Molecular Biology

Angiogenin-Cleaved tRNA Halves Interact with Cytochrome c, Protecting Cells from Apoptosis during Osmotic Stress

Mridusmita Saikia et al.

MOLECULAR AND CELLULAR BIOLOGY (2014)

Article Biochemistry & Molecular Biology

A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs

Takeo Suzuki et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops

Tatsuya Maehigashi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments

Pavel Ivanov et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Mycobacterial mistranslation is necessary and sufficient for rifampicin phenotypic resistance

Babak Javid et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration

Ryuta Ishimura et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Human tRNA synthetase catalytic nulls with diverse functions

Wing-Sze Lo et al.

SCIENCE (2014)

Review Biochemistry & Molecular Biology

Role of tRNA modifications in human diseases

Adrian Gabriel Torres et al.

TRENDS IN MOLECULAR MEDICINE (2014)

Article Biochemistry & Molecular Biology

Human cytoplasmic ProX edits mischarged tRNAPro with amino acid but not tRNA specificity

Liang-Liang Ruan et al.

BIOCHEMICAL JOURNAL (2013)

Review Medicine, Research & Experimental

Aminoacyl-tRNA synthetases in medicine and disease

Peng Yao et al.

EMBO MOLECULAR MEDICINE (2013)

Article Biochemistry & Molecular Biology

Genome-Wide Analysis Reveals Origin of Transfer RNA Genes from tRNA Halves

Zhixiang Zuo et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Structural Switch of Lysyl-tRNA Synthetase between Translation and Transcription

Yifat Ofir-Birin et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

The Mycobacterium tuberculosis regulatory network and hypoxia

James E. Galagan et al.

NATURE (2013)

Review Biochemistry & Molecular Biology

Essential nontranslational functions of tRNA synthetases

Min Guo et al.

NATURE CHEMICAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

MODOMICS: a database of RNA modification pathways-2013 update

Magdalena A. Machnicka et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Diversity of human tRNA genes from the 1000-genomes project

Marc Parisien et al.

RNA BIOLOGY (2013)

Review Biochemistry & Molecular Biology

Non-canonical roles of lysyl-tRNA synthetase in health and disease

Alex Motzik et al.

TRENDS IN MOLECULAR MEDICINE (2013)

Article Genetics & Heredity

In silico analysis of DosR regulon proteins of Mycobacterium tuberculosis

Suganya Selvaraj et al.

Article Biochemistry & Molecular Biology

Genome-wide Identification and Quantitative Analysis of Cleaved tRNA Fragments Induced by Cellular Stress

Mridusmita Saikia et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Oncology

YB-1, the E2F Pathway, and Regulation of Tumor Cell Growth

Annette Lasham et al.

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2012)

Article Biochemistry & Molecular Biology

RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis

Francesca Tuorto et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Review Genetics & Heredity

Speeding with control: codon usage, tRNAs, and ribosomes

Eva Maria Novoa et al.

TRENDS IN GENETICS (2012)

Review Genetics & Heredity

Human Mitochondrial tRNAs: Biogenesis, Function, Structural Aspects, and Diseases

Tsutomu Suzuki et al.

ANNUAL REVIEW OF GENETICS, VOL 45 (2011)

Article Biochemistry & Molecular Biology

Angiogenin-Induced tRNA Fragments Inhibit Translation Initiation

Pavel Ivanov et al.

MOLECULAR CELL (2011)

Article Biochemistry & Molecular Biology

The RNA modification database, RNAMDB: 2011 update

William A. Cantara et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites

Li Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Genetics & Heredity

The RNA-Methyltransferase Misu (NSun2) Poises Epidermal Stem Cells to Differentiate

Sandra Blanco et al.

PLOS GENETICS (2011)

Review Biochemistry & Molecular Biology

Formation of the tRNALys packaging complex in HIV-1

Lawrence Kleiman et al.

FEBS LETTERS (2010)

Article Cell Biology

RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage

Matthias Schaefer et al.

GENES & DEVELOPMENT (2010)

Article Biochemistry & Molecular Biology

Functional Analysis of Human tRNA Isodecoders

Renaud Geslain et al.

JOURNAL OF MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

tRNA Binds to Cytochrome c and Inhibits Caspase Activation

Yide Mei et al.

MOLECULAR CELL (2010)

Review Biochemistry & Molecular Biology

Translational Regulation of Gene Expression during Conditions of Cell Stress

Keith A. Spriggs et al.

MOLECULAR CELL (2010)

Article Multidisciplinary Sciences

Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring

Sheau-Fang Ng et al.

NATURE (2010)

Article Biochemistry & Molecular Biology

Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs

Mridusmita Saikia et al.

Article Cell Biology

Angiogenin cleaves tRNA and promotes stress-induced translational repression

Satoshi Yamasaki et al.

JOURNAL OF CELL BIOLOGY (2009)

Article Multidisciplinary Sciences

Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea

Kosuke Fujishima et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Transfer RNA genes in pieces

Lennart Randau et al.

EMBO REPORTS (2008)

Article Immunology

Tuberculous granulomas are hypoxic in guinea pigs, rabbits, and nonhuman primates

Laura E. Via et al.

INFECTION AND IMMUNITY (2008)

Article Multidisciplinary Sciences

Distinct domains of tRNA synthetase recognize the same base pair

Kirk Beebe et al.

NATURE (2008)

Review Biochemistry & Molecular Biology

tRNA's wobble decoding of the genome: 40 years of modification

Paul F. Agris et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans

Ana C. Gomes et al.

GENOME BIOLOGY (2007)

Article Biochemistry & Molecular Biology

YB-1 is important for an early stage embryonic development - Neural tube formation and cell proliferation

Takeshi Uchiumi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Genetics & Heredity

Tissue-specific differences in human transfer RNA expression

Kimberly A. Dittmar et al.

PLOS GENETICS (2006)

Article Multidisciplinary Sciences

Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration

Jeong Woong Lee et al.

NATURE (2006)

Article Multidisciplinary Sciences

RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse

Minoo Rassoulzadegan et al.

NATURE (2006)

Article Multidisciplinary Sciences

Trbp 111 selectively binds a noncovalently assembled tRNA-like structure

T Kushiro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Fragile T-stem in disease-associated human mitochondrial tRNA sensitizes structure to local and distant mutations

SO Kelley et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Crystal structure of Trbp111: a structure-specific tRNA-binding protein

MA Swairjo et al.

EMBO JOURNAL (2000)

Article Biochemistry & Molecular Biology

Functional defects of pathogenic human mitochondrial tRNAs related to structural fragility

SO Kelley et al.

NATURE STRUCTURAL BIOLOGY (2000)