4.7 Review

Virus taxonomy in the age of metagenomics

Related references

Note: Only part of the references are listed.
Article Virology

Genomoviridae: a new family of widespread single-stranded DNA viruses

Mart Krupovic et al.

ARCHIVES OF VIROLOGY (2016)

Article Infectious Diseases

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem

Anisha Dayaram et al.

INFECTION GENETICS AND EVOLUTION (2016)

Article Multidisciplinary Sciences

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Simon Roux et al.

NATURE (2016)

Article Multidisciplinary Sciences

Uncovering Earth's virome

David Paez-Espino et al.

NATURE (2016)

Article Microbiology

Re-examination of the relationship between marine virus and microbial cell abundances

Charles H. Wigington et al.

NATURE MICROBIOLOGY (2016)

Article Biology

A new family of hybrid virophages from an animal gut metagenome

Natalya Yutin et al.

BIOLOGY DIRECT (2015)

Article Infectious Diseases

Diverse small circular DNA viruses circulating amongst estuarine molluscs

Anisha Dayaram et al.

INFECTION GENETICS AND EVOLUTION (2015)

Review Biotechnology & Applied Microbiology

Methods for virus classification and the challenge of incorporating metagenomic sequence data

Peter Simmonds

JOURNAL OF GENERAL VIROLOGY (2015)

Article Virology

Move Over, Bacteria! Viruses Make Their Mark as Mutualistic Microbial Symbionts

Marilyn J. Roossinck

JOURNAL OF VIROLOGY (2015)

Article Multidisciplinary Sciences

Patterns and ecological drivers of ocean viral communities

Jennifer R. Brum et al.

SCIENCE (2015)

Article Biotechnology & Applied Microbiology

Classifying the uncultivated microbial majority: A place for metagenomic data in the Candidatus proposal

Konstantinos T. Konstantinidis et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2015)

Review Biotechnology & Applied Microbiology

The changing landscape of microbial biodiversity exploration and its implications for systematics

Brian P. Hedlund et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2015)

Review Virology

Plants, viruses and the environment: Ecology and mutualism

Marilyn J. Roossinck

VIROLOGY (2015)

Article Multidisciplinary Sciences

Four novel algal virus genomes discovered from Yellowstone Lake metagenomes

Weijia Zhang et al.

SCIENTIFIC REPORTS (2015)

Article Virology

Biogeography of Viruses in the Sea

Cheryl-Emiliane T. Chow et al.

ANNUAL REVIEW OF VIROLOGY, VOL 2 (2015)

Article Biotechnology & Applied Microbiology

High-Level Diversity of Tailed Phages, Eukaryote-Associated Viruses, and Virophage-Like Elements in the Metaviromes of Antarctic Soils

Olivier Zablocki et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biochemical Research Methods

Library preparation for highly accurate population sequencing of RNA viruses

Ashley Acevedo et al.

NATURE PROTOCOLS (2014)

Article Multidisciplinary Sciences

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

Bas E. Dutilh et al.

NATURE COMMUNICATIONS (2014)

Article Virology

Megavirales, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses

Philippe Colson et al.

ARCHIVES OF VIROLOGY (2013)

Editorial Material Biotechnology & Applied Microbiology

Viruses: unlocking the greatest biodiversity on Earth

Curtis A. Suttle

GENOME (2013)

Article Ecology

Are we missing half of the viruses in the ocean?

Grieg F. Steward et al.

ISME JOURNAL (2013)

Article Ecology

Previously unknown and highly divergent ssDNA viruses populate the oceans

Jessica M. Labonte et al.

ISME JOURNAL (2013)

Article Virology

Diversity of Virophages in Metagenomic Data Sets

Jinglie Zhou et al.

JOURNAL OF VIROLOGY (2013)

Review Microbiology

Fungal systematics: is a new age of enlightenment at hand?

David S. Hibbett et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Virology

A virocentric perspective on the evolution of life

Eugene V. Koonin et al.

CURRENT OPINION IN VIROLOGY (2013)

Review Genetics & Heredity

Plant Virus Metagenomics: Biodiversity and Ecology

Marilyn J. Roossinck

ANNUAL REVIEW OF GENETICS, VOL 46 (2012)

Article Multidisciplinary Sciences

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

Conrad L. Schoch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Editorial Material Multidisciplinary Sciences

Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life

Norman R. Pace et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Virology

Metagenomics and future perspectives in virus discovery

John L. Mokili et al.

CURRENT OPINION IN VIROLOGY (2012)

Review Biology

How stands the Tree of Life a century and a half after The Origin?

Maureen A. O'Malley et al.

BIOLOGY DIRECT (2011)

Review Virology

What Does Virus Evolution Tell Us about Virus Origins?

Edward C. Holmes

JOURNAL OF VIROLOGY (2011)

Article Multidisciplinary Sciences

Virophage control of antarctic algal host-virus dynamics

Sheree Yau et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Virology

Exploring the viral world through metagenomics

Karyna Rosario et al.

CURRENT OPINION IN VIROLOGY (2011)

Article Virology

Bacteriophages and their genomes

Graham F. Hatfull et al.

CURRENT OPINION IN VIROLOGY (2011)

Article Mycology

The Amsterdam Declaration on Fungal Nomenclature

David L. Hawksworth et al.

IMA FUNGUS (2011)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Biochemistry & Molecular Biology

Reticulate representation of evolutionary and functional relationships between phage genomes

Gipsi Lima-Mendez et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Review Microbiology

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

Eugene V. Koonin et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Biochemistry & Molecular Biology

The marine viromes of four oceanic regions

Florent E. Angly et al.

PLOS BIOLOGY (2006)

Review Biology

The ancient Virus World and evolution of cells

Eugene V. Koonin et al.

BIOLOGY DIRECT (2006)

Article Biology

Diversity and population structure of a near-shore marine-sediment viral community

M Breitbart et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)

Article Microbiology

The Phage Proteomic Tree: a genome-based taxonomy for phage

F Rohwer et al.

JOURNAL OF BACTERIOLOGY (2002)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)