4.7 Article

The IBD interactome: an integrated view of aetiology, pathogenesis and therapy

Related references

Note: Only part of the references are listed.
Article Gastroenterology & Hepatology

Serologic microbial associated markers can predict Crohn's disease behaviour years before disease diagnosis

R. S. Choung et al.

ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2016)

Article Biochemistry & Molecular Biology

Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients

Romain Banchereau et al.

Article Microbiology

The Host Shapes the Gut Microbiota via Fecal MicroRNA

Shirong Liu et al.

CELL HOST & MICROBE (2016)

Review Immunology

Genetic variation in IBD: progress, clues to pathogenesis and possible clinical utility

Byong Duk Ye et al.

EXPERT REVIEW OF CLINICAL IMMUNOLOGY (2016)

Article Immunology

Electronic Sorting of Immune Cell Subpopulations Based on Highly Plastic Genes

Pingzhang Wang et al.

JOURNAL OF IMMUNOLOGY (2016)

Review Immunology

Environmental Immunology: Lessons Learned from Exposure to a Select Panel of Immunotoxicants

Joanna M. Kreitinger et al.

JOURNAL OF IMMUNOLOGY (2016)

Article Multidisciplinary Sciences

Genomic analyses identify molecular subtypes of pancreatic cancer

Peter Bailey et al.

NATURE (2016)

Article Medicine, General & Internal

Genomic Classification and Prognosis in Acute Myeloid Leukemia

Elli Papaemmanuil et al.

NEW ENGLAND JOURNAL OF MEDICINE (2016)

Editorial Material Multidisciplinary Sciences

Gene-environment interplay

Jeremy Berg

SCIENCE (2016)

Article Multidisciplinary Sciences

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

Alexandra Zhernakova et al.

SCIENCE (2016)

Review Multidisciplinary Sciences

Exposing the exposures responsible for type 2 diabetes and obesity

Paul W. Franks et al.

SCIENCE (2016)

Review Multidisciplinary Sciences

Going global by adapting local: A review of recent human adaptation

Shaohua Fan et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Endophenotype Network Models: Common Core of Complex Diseases

Susan Dina Ghiassian et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

Elucidating Compound Mechanism of Action by Network Perturbation Analysis

Jung Hoon Woo et al.

Article Biochemistry & Molecular Biology

Widespread Macromolecular Interaction Perturbations in Human Genetic Disorders

Nidhi Sahni et al.

Review Gastroenterology & Hepatology

Genetics of Inflammatory Bowel Diseases

Dermot P. B. McGovern et al.

GASTROENTEROLOGY (2015)

Review Gastroenterology & Hepatology

Exposome in IBD: Recent Insights in Environmental Factors that Influence the Onset and Course of IBD

Gerhard Rogler et al.

INFLAMMATORY BOWEL DISEASES (2015)

Article Gastroenterology & Hepatology

A MicroRNA Signature in Pediatric Ulcerative Colitis: Deregulation of the miR-4284/CXCL5 Pathway in the Intestinal Epithelium

Georgios Koukos et al.

INFLAMMATORY BOWEL DISEASES (2015)

Article Multidisciplinary Sciences

Beyond the genome

NATURE (2015)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics

Sean J. Humphrey et al.

NATURE BIOTECHNOLOGY (2015)

Review Biochemistry & Molecular Biology

Therapeutic genome editing: prospects and challenges

David Benjamin Turitz Cox et al.

NATURE MEDICINE (2015)

Article Biochemistry & Molecular Biology

Early life dynamics of the human gut virome and bacterial microbiome in infants

Efrem S. Lim et al.

NATURE MEDICINE (2015)

Article Gastroenterology & Hepatology

Immunopathogenesis of IBD: current state of the art

Heitor S. P. de Souza et al.

Nature Reviews Gastroenterology & Hepatology (2015)

Editorial Material Medicine, General & Internal

Multiple Molecular Data Sets and the Classification of Adult Diffuse Gliomas

David W. Ellison

NEW ENGLAND JOURNAL OF MEDICINE (2015)

Article Medicine, General & Internal

A Bronchial Genomic Classifier for the Diagnostic Evaluation of Lung Cancer

Gerard A. Silvestri et al.

NEW ENGLAND JOURNAL OF MEDICINE (2015)

Editorial Material Medicine, General & Internal

Precision Medicine - Personalized, Problematic, and Promising

J. Larry Jameson et al.

NEW ENGLAND JOURNAL OF MEDICINE (2015)

Article Multidisciplinary Sciences

Identifying personal microbiomes using metagenomic codes

Eric A. Franzosa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Review Biochemistry & Molecular Biology

The recruitment of chromatin modifiers by long noncoding RNAs: lessons from PRC2

Chen Davidovich et al.

Article Biochemical Research Methods

CytoCom: a Cytoscape app to visualize, query and analyse disease comorbidity networks

Mohammad Ali Moni et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Human Genetics Shape the Gut Microbiome

Julia K. Goodrich et al.

Review Gastroenterology & Hepatology

Systems biology in inflammatory bowel diseases: ready for prime time

Christos Polytarchou et al.

CURRENT OPINION IN GASTROENTEROLOGY (2014)

Article Gastroenterology & Hepatology

The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead

Aleksandar D. Kostic et al.

GASTROENTEROLOGY (2014)

Review Genetics & Heredity

Chromatin modifiers and remodellers: regulators of cellular differentiation

Taiping Chen et al.

NATURE REVIEWS GENETICS (2014)

Review Biochemistry & Molecular Biology

Circular RNAs: diversity of form and function

Erika Lasda et al.

Review Immunology

Cytokines in inflammatory bowel disease

Markus F. Neurath

NATURE REVIEWS IMMUNOLOGY (2014)

Review Genetics & Heredity

Beyond GWASs: Illuminating the Dark Road from Association to Function

Stacey L. Edwards et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2013)

Article Biochemical Research Methods

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data

Wenting Wang et al.

BIOINFORMATICS (2013)

Review Biochemistry & Molecular Biology

Transcriptional Regulation and Its Misregulation in Disease

Tong Ihn Lee et al.

Review Biochemistry & Molecular Biology

iPOP Goes the World: Integrated Personalized Omics Profiling and the Road toward Improved Health Care

Jennifer Li-Pock-Than et al.

CHEMISTRY & BIOLOGY (2013)

Editorial Material Biochemistry & Molecular Biology

Complex diseases require complex therapies - Science & Society series on drugs and science

Ravi Iyengar

EMBO REPORTS (2013)

Editorial Material Gastroenterology & Hepatology

Expression Quantitative Trait Loci Analysis Identifies Associations Between Genotype and Gene Expression in Human Intestine

Boyko Kabakchiev et al.

GASTROENTEROLOGY (2013)

Review Gastroenterology & Hepatology

Beyond Gene Discovery in Inflammatory Bowel Disease: The Emerging Role of Epigenetics

Nicholas T. Ventham et al.

GASTROENTEROLOGY (2013)

Article Multidisciplinary Sciences

Variation and genetic control of protein abundance in humans

Linfeng Wu et al.

NATURE (2013)

Article Immunology

Personalizing medicine for autoimmune and inflammatory diseases

Andrew C. Chan et al.

NATURE IMMUNOLOGY (2013)

Article Biochemistry & Molecular Biology

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies

Zhenjun Hu et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Pattern discovery and cancer gene identification in integrated cancer genomic data

Qianxing Mo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Extensive Variation in Chromatin States Across Humans

Maya Kasowski et al.

SCIENCE (2013)

Article Biochemical Research Methods

iFad: an integrative factor analysis model for drug-pathway association inference

Haisu Ma et al.

BIOINFORMATICS (2012)

Article Oncology

Metformin in early breast cancer: a prospective window of opportunity neoadjuvant study

Saroj Niraula et al.

BREAST CANCER RESEARCH AND TREATMENT (2012)

Article Gastroenterology & Hepatology

Urinary NMR metabolomic profiles discriminate inflammatory bowel disease from healthy

Natasha S. Stephens et al.

Journal of Crohns & Colitis (2012)

Article Biochemical Research Methods

A travel guide to Cytoscape plugins

Rintaro Saito et al.

NATURE METHODS (2012)

Review Gastroenterology & Hepatology

The gut microbiota in IBD

Chaysavanh Manichanh et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2012)

Review Cell Biology

Metabolomics: the apogee of the omics trilogy

Gary J. Patti et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)

Article Multidisciplinary Sciences

Integrative Subtype Discovery in Glioblastoma Using iCluster

Ronglai Shen et al.

PLOS ONE (2012)

Article Genetics & Heredity

Abundant Pleiotropy in Human Complex Diseases and Traits

Shanya Sivakumaran et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2011)

Review Cell Biology

Crohn disease A current perspective on genetics, autophagy and immunity

Thaddeus S. Stappenbeck et al.

AUTOPHAGY (2011)

Article Gastroenterology & Hepatology

DNA Methylation of Colon Mucosa in Ulcerative Colitis Patients: Correlation with Inflammatory Status

Shunsuke Saito et al.

INFLAMMATORY BOWEL DISEASES (2011)

Editorial Material Multidisciplinary Sciences

Genomics Is Not Enough

Aravinda Chakravarti

SCIENCE (2011)

Article Multidisciplinary Sciences

Widespread RNA and DNA Sequence Differences in the Human Transcriptome

Mingyao Li et al.

SCIENCE (2011)

Article Cell Biology

Computational Repositioning of the Anticonvulsant Topiramate for Inflammatory Bowel Disease

Joel T. Dudley et al.

SCIENCE TRANSLATIONAL MEDICINE (2011)

Article Biochemical Research Methods

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

Charles J. Vaske et al.

BIOINFORMATICS (2010)

Review Medicine, General & Internal

Genomewide Association Studies and Assessment of the Risk of Disease

Teri A. Manolio

NEW ENGLAND JOURNAL OF MEDICINE (2010)

Review Pharmacology & Pharmacy

Unveiling the role of network and systems biology in drug discovery

Albert Pujol et al.

TRENDS IN PHARMACOLOGICAL SCIENCES (2010)

Article Biotechnology & Applied Microbiology

CellMiner: a relational database and query tool for the NCI-60 cancer cell lines

Uma T. Shankavaram et al.

BMC GENOMICS (2009)

Article Medicine, General & Internal

Inflammatory Bowel Disease and Mutations Affecting the Interleukin-10 Receptor

Erik-Oliver Glocker et al.

NEW ENGLAND JOURNAL OF MEDICINE (2009)

Article Biochemical Research Methods

OmicsViz: Cytoscape plug-in for visualizing omics data across species

Tian Xia et al.

BIOINFORMATICS (2008)

Article Medical Laboratory Technology

Proteomics for prediction and characterization of response to infliximab in Crohn's disease:: A pilot study

Marie-Alice Meuwis et al.

CLINICAL BIOCHEMISTRY (2008)

Article Multidisciplinary Sciences

Variations in DNA elucidate molecular networks that cause disease

Yanqing Chen et al.

NATURE (2008)

Article Biotechnology & Applied Microbiology

A modular approach for integrative analysis of large-scale gene-expression and drug-response data

Zoltan Kutalik et al.

NATURE BIOTECHNOLOGY (2008)

Editorial Material Multidisciplinary Sciences

Perspective - From genotype to phenotype: Systems biology meets natural variation

Philip N. Benfey et al.

SCIENCE (2008)

Article Gastroenterology & Hepatology

Mucosal T-cell immunoregulation varies in early and late inflammatory bowel disease

S. Kugathasan et al.

Article Biochemical Research Methods

GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks

James Vlasblom et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Inhibition of IFN-γ transcription by site-specific methylation during T helper cell development

Brendan Jones et al.

EMBO JOURNAL (2006)

Article Multidisciplinary Sciences

A network-based analysis of systemic inflammation in humans

SE Calvano et al.

NATURE (2005)

Article Biochemical Research Methods

ProViz: protein interaction visualization and exploration

F Iragne et al.

BIOINFORMATICS (2005)

Article Biochemical Research Methods

VisANT: an online visualization and analysis tool for biological interaction data

ZJ Hu et al.

BMC BIOINFORMATICS (2004)

Article Gastroenterology & Hepatology

High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease

A Darfeuille-Michaud et al.

GASTROENTEROLOGY (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Biochemical Research Methods

Pathway studio - the analysis and navigation of molecular networks

A Nikitin et al.

BIOINFORMATICS (2003)

Article Gastroenterology & Hepatology

Mutations in NOD2 are associated with fibrostenosing disease in patients with Crohn's disease

MT Abreu et al.

GASTROENTEROLOGY (2002)

Article Gastroenterology & Hepatology

Fusobacterium varium localized in the colonic mucosa of patients with ulcerative colitis stimulates species-specific antibody

T Ohkusa et al.

JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2002)

Article Gastroenterology & Hepatology

Distinct inflammatory mechanisms mediate early versus late colitis in mice

DM Spencer et al.

GASTROENTEROLOGY (2002)