Related references
Note: Only part of the references are listed.Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil
Wee Tek Tay et al.
SCIENTIFIC REPORTS (2017)
Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus
Kristian G. Andersen et al.
CELL (2015)
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
Richard O. Prum et al.
NATURE (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
ModelOMatic: Fast and Automated Model Selection between RY, Nucleotide, Amino Acid, and Codon Substitution Models
Simon Whelan et al.
SYSTEMATIC BIOLOGY (2015)
jmodeltest.org: selection of nucleotide substitution models on the cloud
Jose Manuel Santorum et al.
BIOINFORMATICS (2014)
From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
Brad R. Ruhfel et al.
BMC EVOLUTIONARY BIOLOGY (2014)
Mixture Models of Nucleotide Sequence Evolution that Account for Heterogeneity in the Substitution Process Across Sites and Across Lineages
Vivek Jayaswal et al.
SYSTEMATIC BIOLOGY (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Inferring ancient divergences requires genes with strong phylogenetic signals
Leonidas Salichos et al.
NATURE (2013)
From Trajectories to Averages: An Improved Description of the Heterogeneity of Substitution Rates Along Lineages
Stephane Guindon
SYSTEMATIC BIOLOGY (2013)
The Influence of Rate Heterogeneity among Sites on the Time Dependence of Molecular Rates
Julien Soubrier et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
Robert Lanfear et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
Mario dos Reis et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
INDELible: A Flexible Simulator of Biological Sequence Evolution
William Fletcher et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Dongying Wu et al.
NATURE (2009)
jModelTest: Phylogenetic model averaging
David Posada
MOLECULAR BIOLOGY AND EVOLUTION (2008)
An improved general amino acid replacement matrix
Si Quang Le et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online
David Posada
NUCLEIC ACIDS RESEARCH (2006)
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
TM Keane et al.
BMC EVOLUTIONARY BIOLOGY (2006)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
Characterization of the type I interferon locus and identification of novel genes
MP Hardy et al.
GENOMICS (2004)
A molecular framework for the phylogeny of the ant subfamily Dolichoderinae
M Chiotis et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2000)