4.8 Article

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

TESS3: fast inference of spatial population structure and genome scans for selection

Kevin Caye et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biotechnology & Applied Microbiology

ALLMAPS: robust scaffold ordering based on multiple maps

Haibao Tang et al.

GENOME BIOLOGY (2015)

Article Genetics & Heredity

Fast and Efficient Estimation of Individual Ancestry Coefficients

Eric Frichot et al.

GENETICS (2014)

Article Multidisciplinary Sciences

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz et al.

PLOS ONE (2014)

Article Agronomy

Genomic Prediction of Hybrid Wheat Performance

Yusheng Zhao et al.

CROP SCIENCE (2013)

Article Biochemistry & Molecular Biology

The genome of the pear (Pyrus bretschneideri Rehd.)

Jun Wu et al.

GENOME RESEARCH (2013)

Article Multidisciplinary Sciences

Draft genome of the wheat A-genome progenitor Triticum urartu

Hong-Qing Ling et al.

NATURE (2013)

Article Biotechnology & Applied Microbiology

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

Rajeev K. Varshney et al.

NATURE BIOTECHNOLOGY (2013)

Article Genetics & Heredity

A heterozygous moth genome provides insights into herbivory and detoxification

Minsheng You et al.

NATURE GENETICS (2013)

Article Multidisciplinary Sciences

Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice

Xiaoyi Zhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Agronomy

Genetic Improvement of Pearl Millet in India

O. P. Yadav et al.

AGRICULTURAL RESEARCH (2013)

Article Biochemical Research Methods

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

Marcel H. Schulz et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

Angelique D'Hont et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Reference genome sequence of the model plant Setaria

Jeffrey L. Bennetzen et al.

NATURE BIOTECHNOLOGY (2012)

Article Genetics & Heredity

Genome-wide genetic changes during modern breeding of maize

Yinping Jiao et al.

NATURE GENETICS (2012)

Article Genetics & Heredity

Maize HapMap2 identifies extant variation from a genome in flux

Jer-Ming Chia et al.

NATURE GENETICS (2012)

Article Genetics & Heredity

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

Christian Riedelsheimer et al.

NATURE GENETICS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Physiology

II.1.5 Phenotyping pearl millet for adaptation to drought

Vincent Vadez et al.

FRONTIERS IN PHYSIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome

Yajuan Zeng et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biotechnology & Applied Microbiology

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

Eman K. Al-Dous et al.

NATURE BIOTECHNOLOGY (2011)

Article Multidisciplinary Sciences

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire et al.

PLOS ONE (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Genome sequencing and analysis of the model grass Brachypodium distachyon

John P. Vogel et al.

NATURE (2010)

Article Multidisciplinary Sciences

Genome sequence of the palaeopolyploid soybean

Jeremy Schmutz et al.

NATURE (2010)

Article Biochemical Research Methods

Infernal 1.0: inference of RNA alignments

Eric P. Nawrocki et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

The Sorghum bicolor genome and the diversification of grasses

Andrew H. Paterson et al.

NATURE (2009)

Article Biochemical Research Methods

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

Ken Chen et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

The B73 Maize Genome: Complexity, Diversity, and Dynamics

Patrick S. Schnable et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Letter Plant Sciences

Enchilada redux: how complete is your genome sequence?

Renyi Liu et al.

NEW PHYTOLOGIST (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

Zhao Xu et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Creating a honey bee consensus gene set

Christine G. Elsik et al.

GENOME BIOLOGY (2007)

Article Genetics & Heredity

Population structure and eigenanalysis

Nick Patterson et al.

PLOS GENETICS (2006)

Article Biochemical Research Methods

CAFE: a computational tool for the study of gene family evolution

T De Bie et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

InterProScan: protein domains identifier

E Quevillon et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

Haploview: analysis and visualization of LD and haplotype maps

JC Barrett et al.

BIOINFORMATICS (2005)

Article Cell Biology

Repbase update, a database of eukaryotic repetitive elements

J Jurka et al.

CYTOGENETIC AND GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Rfam: annotating non-coding RNAs in complete genomes

S Griffiths-Jones et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

AUGUSTUS: a web server for gene finding in eukaryotes

M Stanke et al.

NUCLEIC ACIDS RESEARCH (2004)

Review Plant Sciences

Early plant domestications in southern India: some preliminary archaeobotanical results

D Fuller et al.

VEGETATION HISTORY AND ARCHAEOBOTANY (2004)

Article Biochemistry & Molecular Biology

GeneWise and genomewise

E Birney et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Article Multidisciplinary Sciences

A draft sequence of the rice genome (Oryza sativa L. ssp indica)

J Yu et al.

SCIENCE (2002)

Review Multidisciplinary Sciences

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

S Kaul et al.

NATURE (2000)

Article Biochemistry & Molecular Biology

Ab initio gene finding in Drosophila genomic DNA

AA Salamov et al.

GENOME RESEARCH (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Biochemistry & Molecular Biology

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

A Bairoch et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Agronomy

Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae)

V Poncet et al.

THEORETICAL AND APPLIED GENETICS (2000)