4.8 Article

GuideScan software for improved single and paired CRISPR guide RNA design

Journal

NATURE BIOTECHNOLOGY
Volume 35, Issue 4, Pages 347-+

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/nbt.3804

Keywords

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Funding

  1. NIH [P30-CA008748, U01-HG007033, U01-HG007893]
  2. Geoffrey Beene Cancer Research Foundation
  3. Uniting Against Lung Cancer Foundation
  4. Cycle for Survival Foundation
  5. Pershing Square Sohn Cancer Research Alliance
  6. Lung Cancer Research Foundation

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We present GuideScan software for the design of CRISPR guide RNA libraries that can be used to edit coding and noncoding genomic regions. GuideScan produces high-density sets of guide RNAs (gRNAs) for single- and paired-gRNA genome-wide screens. We also show that the trie data structure of GuideScan enables the design of gRNAs that are more specific than those designed by existing tools.

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