4.8 Article

Global landscape of cell envelope protein complexes in Escherichia coli

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins

Sikander Hayat et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

A Supercomplex Spanning the Inner and Outer Membranes Mediates the Biogenesis of β-Barrel Outer Membrane Proteins in Bacteria

Yan Wang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Review Multidisciplinary Sciences

Antibacterial drug discovery in the resistance era

Eric D. Brown et al.

NATURE (2016)

Article Evolutionary Biology

Evolution of the Translocation and Assembly Module (TAM)

Eva Heinz et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

MntR(Rv2788): a transcriptional regulator that controls manganese homeostasis in Mycobacterium tuberculosis

Ruchi Pandey et al.

MOLECULAR MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Histidine phosphocarrier protein regulates pyruvate kinase A activity in response to glucose in Vibrio vulnificus

Hey-Min Kim et al.

MOLECULAR MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

Panorama of ancient metazoan macromolecular complexes

Cuihong Wan et al.

NATURE (2015)

Review Microbiology

Bacterial protein networks: properties and functions

Athanasios Typas et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Biochemical Research Methods

Protein Complexes in Bacteria

J. Harry Caufield et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

STRING v10: protein-protein interaction networks, integrated over the tree of life

Damian Szklarczyk et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Biochemistry & Molecular Biology

Biosynthesis and Export of Bacterial Lipopolysaccharides

Chris Whitfield et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)

Article Biochemistry & Molecular Biology

Characterization of cardiolipins and their oxidation products by LC-MS analysis

Yulia Y. Tyurina et al.

CHEMISTRY AND PHYSICS OF LIPIDS (2014)

Article Biochemical Research Methods

Proteome-wide Subcellular Topologies of E. coli Polypeptides Database (STEPdb)

Georgia Orfanoudaki et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biotechnology & Applied Microbiology

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases

Sandra Orchard et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

MS-GF plus makes progress towards a universal database search tool for proteomics

Sangtae Kim et al.

NATURE COMMUNICATIONS (2014)

Article Biochemical Research Methods

Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MSMS

Markku Varjosalo et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

The structural basis of autotransporter translocation by TamA

Fabian Gruss et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Review Biochemistry & Molecular Biology

Membrane transport metabolons

Trevor F. Moraes et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2012)

Article Biochemistry & Molecular Biology

A Census of Human Soluble Protein Complexes

Pierre C. Havugimana et al.

Article Multidisciplinary Sciences

Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae

Mohan Babu et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

Discovery of an archetypal protein transport system in bacterial outer membranes

Joel Selkrig et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks

Boc Alix et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biochemistry & Molecular Biology

beta-Barrel Membrane Protein Assembly by the Barn Complex

Christine L. Hagan et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80 (2011)

Article Biochemistry & Molecular Biology

Phenotypic Landscape of a Bacterial Cell

Robert J. Nichols et al.

Article Biochemistry & Molecular Biology

A Protein Complex Network of Drosophila melanogaster

K. G. Guruharsha et al.

Article Biochemistry & Molecular Biology

Adapt locally and act globally: strategy to maintain high chemoreceptor sensitivity in complex environments

Ganhui Lan et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Letter Biochemical Research Methods

SignalP 4.0: discriminating signal peptides from transmembrane regions

Thomas Nordahl Petersen et al.

NATURE METHODS (2011)

Review Microbiology

Targeting bacterial membrane function: an underexploited mechanism for treating persistent infections

Julian G. Hurdle et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Cell Biology

Integrating Protein Homeostasis Strategies in Prokaryotes

Axel Mogk et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)

Article Biochemistry & Molecular Biology

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

Gabriel Ostlund et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Defining the Human Deubiquitinating Enzyme Interaction Landscape

Mathew E. Sowa et al.

Article Biochemistry & Molecular Biology

Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

Stefan Klumpp et al.

Article Biochemical Research Methods

Predicting Protein Complexes from PPI Data: A Core-Attachment Approach

Henry C. M. Leung et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes

Zhao Xu et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane

Juliana C. Malinverni et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu et al.

PLOS BIOLOGY (2009)

Article Biochemical Research Methods

eSGA:: E. coli synthetic genetic array analysis

Gareth Butland et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

A new method to measure the semantic similarity of GO terms

James Z. Wang et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Lipid composition of membranes of Escherichia coli by liquid chromatography/tandem mass spectrometry using negative electrospray ionization

Delphine Oursel et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2007)

Article Multidisciplinary Sciences

The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins

Sylvie Letoffe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemical Research Methods

Characterization of cardiolipin as the sodiated ions by positive-ion electrospray ionization with multiple stage quadrupole ion-trap mass spectrometry

Fong-Fu Hsu et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2006)

Article Biochemistry & Molecular Biology

Large-scale identification of protein-protein interaction of Escherichia coli K-12

M Arifuzzaman et al.

GENOME RESEARCH (2006)

Article Biochemical Research Methods

RF cloning:: A restriction-free method for inserting target genes into plasmids

F van den Ent et al.

JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS (2006)

Article Multidisciplinary Sciences

Identification of a domain in Yersinia virulence factor YadA that is crucial for extracellular matrix-specific cell adhesion and uptake

T Heise et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba et al.

MOLECULAR SYSTEMS BIOLOGY (2006)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

A probabilistic functional network of yeast genes

I Lee et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

A combined transmembrane topology and signal peptide prediction method

L Käll et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

M Remm et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Multidisciplinary Sciences

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

KA Datsenko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)