Related references
Note: Only part of the references are listed.PGSB PlantsDB: updates to the database framework for comparative plant genome research
Manuel Spannagl et al.
NUCLEIC ACIDS RESEARCH (2016)
Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation
Joanne Russell et al.
NATURE GENETICS (2016)
Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes
Sebastian Beier et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
Helena Stankova et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize
Candice N. Hirsch et al.
PLANT CELL (2016)
Revealing a 5,000-y-old beer recipe in China
Jiajing Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Rachid Ounit et al.
BMC GENOMICS (2015)
Evolution of the Grain Dispersal System in Barley
Mohammad Pourkheirandish et al.
CELL (2015)
BARLEX - the Barley Draft Genome Explorer
Christian Colmsee et al.
MOLECULAR PLANT (2015)
Assembly and diploid architecture of an individual human genome via single-molecule technologies
Matthew Pendleton et al.
NATURE METHODS (2015)
Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H
Lala Aliyeva-Schnorr et al.
PLANT JOURNAL (2015)
Sequencing of 15622 gene-bearing BACs clarifies the gene-dense regions of the barley genome
Maria Munoz-Amatriain et al.
PLANT JOURNAL (2015)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Hi-C Analysis in Arabidopsis Identifies the KNOT, a Structure with Similarities to the flamenco Locus of Drosophila
Stefan Grob et al.
MOLECULAR CELL (2014)
A Sequence-Ready Physical Map of Barley Anchored Genetically by Two Million Single-Nucleotide Polymorphisms
Ruvini Ariyadasa et al.
PLANT PHYSIOLOGY (2014)
Caspase-Like Activities Accompany Programmed Cell Death Events in Developing Barley Grains
Van Tran et al.
PLOS ONE (2014)
PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses
Ping Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
Klaus F. X. Mayer et al.
SCIENCE (2014)
Structural and functional partitioning of bread wheat chromosome 3B
Frederic Choulet et al.
SCIENCE (2014)
Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology
Hongzhi Cao et al.
GIGASCIENCE (2014)
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
Gordon Gremme et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
NATURE BIOTECHNOLOGY (2013)
Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond
Martin Mascher et al.
PLANT JOURNAL (2013)
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
Martin Mascher et al.
PLANT JOURNAL (2013)
Emergence of Agriculture in the Foothills of the Zagros Mountains of Iran
Simone Riehl et al.
SCIENCE (2013)
What Was Brewing in the Natufian? An Archaeological Assessment of Brewing Technology in the Epipaleolithic
Brian Hayden et al.
JOURNAL OF ARCHAEOLOGICAL METHOD AND THEORY (2013)
HiCNorm: removing biases in Hi-C data via Poisson regression
Ming Hu et al.
BIOINFORMATICS (2012)
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update
Rod Peakall et al.
BIOINFORMATICS (2012)
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
Reza Kalhor et al.
NATURE BIOTECHNOLOGY (2012)
Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
Ernest T. Lam et al.
NATURE BIOTECHNOLOGY (2012)
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley
Jordi Comadran et al.
NATURE GENETICS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Hi-C: A comprehensive technique to capture the conformation of genomes
Jon-Matthew Belton et al.
METHODS (2012)
Chromosome Organization and Dynamics during Interphase, Mitosis, and Meiosis in Plants
Choon-Lin Tiang et al.
PLANT PHYSIOLOGY (2012)
Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport
Li-Qing Chen et al.
SCIENCE (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
The role of cult and feasting in the emergence of Neolithic communities. New evidence from Gobekli Tepe, south-eastern Turkey
Oliver Dietrich et al.
ANTIQUITY (2012)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Development of maternal seed tissue in barley is mediated by regulated cell expansion and cell disintegration and coordinated with endosperm growth
Volodymyr Radchuk et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
SignalP 4.0: discriminating signal peptides from transmembrane regions
Thomas Nordahl Petersen et al.
NATURE METHODS (2011)
Dynamic 13C/1H NMR imaging uncovers sugar allocation in the living seed
Gerd Melkus et al.
PLANT BIOTECHNOLOGY JOURNAL (2011)
Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs Derived from 12 Clone Libraries
Takashi Matsumoto et al.
PLANT PHYSIOLOGY (2011)
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
Fran Supek et al.
PLOS ONE (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Tablet-next generation sequence assembly visualization
Iain Milne et al.
BIOINFORMATICS (2010)
Flapjack-graphical genotype visualization
Iain Milne et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
A three-dimensional model of the yeast genome
Zhijun Duan et al.
NATURE (2010)
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel et al.
NATURE (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley
Burkhard Steuernagel et al.
BMC GENOMICS (2009)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson et al.
NATURE (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Patrick S. Schnable et al.
SCIENCE (2009)
Identification and verification of QTLs for agronomic traits using wild barley introgression lines
Inga Schmalenbach et al.
THEORETICAL AND APPLIED GENETICS (2009)
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
David Ellinghaus et al.
BMC BIOINFORMATICS (2008)
The map-based sequence of the rice genome
T Matsumoto et al.
NATURE (2005)
Haploview: analysis and visualization of LD and haplotype maps
JC Barrett et al.
BIOINFORMATICS (2005)
Dissection of a malting quality QTL region on chromosome 1 (7H) of barley
F Han et al.
MOLECULAR BREEDING (2004)
WormBase: a multi-species resource for nematode biology and genomics
TW Harris et al.
NUCLEIC ACIDS RESEARCH (2004)
The Pfam protein families database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content
A Houben et al.
PLANT JOURNAL (2003)
Preparation of HMW DNA from plant nuclei and chromosomes isolated from root tips
H Simkova et al.
BIOLOGIA PLANTARUM (2003)
Sequence organization of barley centromeres
S Hudakova et al.
NUCLEIC ACIDS RESEARCH (2001)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)
A greedy algorithm for aligning DNA sequences
Z Zhang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2000)