4.5 Article

Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection

Related references

Note: Only part of the references are listed.
Article Hematology

Challenges and Opportunities in Linking Long Noncoding RNAs to Cardiovascular, Lung, and Blood Diseases

Jane E. Freedman et al.

ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Analysis and prediction of drug-drug interaction by minimum redundancy maximum relevance and incremental feature selection

Lili Liu et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2017)

Review Biochemical Research Methods

A comprehensive overview and evaluation of circular RNA detection tools

Xiangxiang Zeng et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Biochemical Research Methods

A Binary Classifier for Prediction of the Types of Metabolic Pathway of Chemicals

Yemin Fang et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2017)

Article Biochemical Research Methods

A Feature and Algorithm Selection Method for Improving the Prediction of Protein Structural Class

Qianwu Ni et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2017)

Article Computer Science, Artificial Intelligence

Analysis of cancer-related IncRNAs using gene ontology and KEGG pathways

Lei Chen et al.

ARTIFICIAL INTELLIGENCE IN MEDICINE (2017)

Article Biochemistry & Molecular Biology

Comparison of circular RNA prediction tools

Thomas B. Hansen et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome

Kaori Kashi et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)

Review Biochemistry & Molecular Biology

Circular RNAs: Identification, biogenesis and function

Karoline K. Ebbesen et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)

Review Biochemistry & Molecular Biology

The specificity of long noncoding RNA expression

Brian S. Gloss et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)

Article Biochemical Research Methods

Predicting the Types of Metabolic Pathway of Compounds Using Molecular Fragments and Sequential Minimal Optimization

Lei Chen et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2016)

Article Biochemical Research Methods

Prediction of Linear B-Cell Epitopes with mRMR Feature Selection and Analysis

Bi-Qing Li et al.

CURRENT BIOINFORMATICS (2016)

Article Computer Science, Artificial Intelligence

A novel features ranking metric with application to scalable visual and bioinformatics data classification

Quan Zou et al.

NEUROCOMPUTING (2016)

Article Computer Science, Artificial Intelligence

Extreme Learning Machine for Multilayer Perceptron

Jiexiong Tang et al.

IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS (2016)

Article Multidisciplinary Sciences

Gene expression profiling gut microbiota in different races of humans

Lei Chen et al.

SCIENTIFIC REPORTS (2016)

Review Biochemistry & Molecular Biology

Structure Prediction: New Insights into Decrypting Long Noncoding RNAs

Kun Yan et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2016)

Review Biochemistry & Molecular Biology

Long noncoding RNA turnover

Je-Hyun Yoon et al.

BIOCHIMIE (2015)

Article Biochemical Research Methods

SPINGO: a rapid species-classifier for microbial amplicon sequences

Guy Allard et al.

BMC BIOINFORMATICS (2015)

Review Oncology

Circular RNA: A new star of noncoding RNAs

Shibin Qu et al.

CANCER LETTERS (2015)

Article Biochemistry & Molecular Biology

The RNA Binding Protein Quaking Regulates Formation of circRNAs

Simon J. Conn et al.

Article Cell Biology

Non-coding mechanisms of local mRNA translation in neuronal dendrites

Kerstin Weiss et al.

EUROPEAN JOURNAL OF CELL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Classification of lung cancer using ensemble-based feature selection and machine learning methods

Zhihua Cai et al.

MOLECULAR BIOSYSTEMS (2015)

Article Biochemistry & Molecular Biology

PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features

Xiaoyong Pan et al.

MOLECULAR BIOSYSTEMS (2015)

Review Oncology

The emerging landscape of circular RNA ciRS-7 in cancer (Review)

Li Peng et al.

ONCOLOGY REPORTS (2015)

Article Biochemistry & Molecular Biology

Regulation of circRNA biogenesis

Ling-Ling Chen et al.

RNA BIOLOGY (2015)

Review Biochemistry & Molecular Biology

RNA-RNA interactions in gene regulation: the coding and noncoding players

Sonia Guil et al.

TRENDS IN BIOCHEMICAL SCIENCES (2015)

Letter Cell Biology

Analysis of the preferences for splice codes across tissues

Tao Huang et al.

PROTEIN & CELL (2015)

Review Cell Biology

Biogenesis, identification, and function of exonic circular RNAs

Iju Chen et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)

Article Computer Science, Interdisciplinary Applications

Combining extreme learning machines using support vector machines for breast tissue classification

Mohammad Reza Daliri

COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING (2015)

Article Biochemistry & Molecular Biology

IncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse

Jing Gong et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Classifying Ten Types of Major Cancers Based on Reverse Phase Protein Array Profiles

Pei-Wei Zhang et al.

PLOS ONE (2015)

Article Biochemical Research Methods

Circular RNAs are depleted of polymorphisms at microRNA binding sites

Laurent F. Thomas et al.

BIOINFORMATICS (2014)

Article Cell Biology

Short intronic repeat sequences facilitate circular RNA production

Dongming Liang et al.

GENES & DEVELOPMENT (2014)

Article Gastroenterology & Hepatology

Long Noncoding RNA in Liver Diseases

Kenji Takahashi et al.

HEPATOLOGY (2014)

Article Computer Science, Artificial Intelligence

LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy

Chen Lin et al.

NEUROCOMPUTING (2014)

Article Multidisciplinary Sciences

Effects of GWAS-Associated Genetic Variants on lncRNAs within IBD and T1D Candidate Loci

Aashiq H. Mirza et al.

PLOS ONE (2014)

Article Developmental Biology

Long noncoding RNAs in spermatogenesis: insights from recent high-throughput transcriptome studies

Alfred Chun-Shui Luk et al.

REPRODUCTION (2014)

Article Biochemistry & Molecular Biology

circBase: a database for circular RNAs

Petar Glazar et al.

Article Biochemistry & Molecular Biology

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

Rory Johnson et al.

Article Computer Science, Artificial Intelligence

An Insight into Extreme Learning Machines: Random Neurons, Random Features and Kernels

Guang-Bin Huang

COGNITIVE COMPUTATION (2014)

Article Biotechnology & Applied Microbiology

GraphProt: modeling binding preferences of RNA-binding proteins

Daniel Maticzka et al.

GENOME BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Expanded identification and characterization of mammalian circular RNAs

Junjie U. Guo et al.

GENOME BIOLOGY (2014)

Article Genetics & Heredity

Reliable Identification of Genomic Variants from RNA-Seq Data

Robert Piskol et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2013)

Review Biochemistry & Molecular Biology

The Intertwining of Transposable Elements and Non-Coding RNAs

Michael Hadjiargyrou et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)

Article Multidisciplinary Sciences

Natural RNA circles function as efficient microRNA sponges

Thomas B. Hansen et al.

NATURE (2013)

Review Cell Biology

RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

Sarah Geisler et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Circular RNAs are abundant, conserved, and associated with ALU repeats

William R. Jeck et al.

Review Genetics & Heredity

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

Cristina Barbosa et al.

PLOS GENETICS (2013)

Review Cell Biology

DNA transposon-based gene vehicles - scenes from an evolutionary drive

Kristian Alsbjerg Skipper et al.

JOURNAL OF BIOMEDICAL SCIENCE (2013)

Article Biochemistry & Molecular Biology

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow et al.

GENOME RESEARCH (2012)

Article Automation & Control Systems

Extreme Learning Machine for Regression and Multiclass Classification

Guang-Bin Huang et al.

IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART B-CYBERNETICS (2012)

Article Biochemical Research Methods

Structure, function and targeting of human telomere RNA

Yan Xu et al.

METHODS (2012)

Article Biotechnology & Applied Microbiology

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

David Kelley et al.

GENOME BIOLOGY (2012)

Editorial Material Cardiac & Cardiovascular Systems

An Introduction to Small Non-coding RNAs: miRNA and snoRNA

Christopher L. Holley et al.

CARDIOVASCULAR DRUGS AND THERAPY (2011)

Review Chemistry, Multidisciplinary

Chemistry in human telomere biology: structure, function and targeting of telomere DNA/RNA

Yan Xu

CHEMICAL SOCIETY REVIEWS (2011)

Review Genetics & Heredity

Dynamic interactions between transposable elements and their hosts

Henry L. Levin et al.

NATURE REVIEWS GENETICS (2011)

Article Multidisciplinary Sciences

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Ahmad M. Khalil et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Computer Science, Artificial Intelligence

A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems

Amir Beck et al.

SIAM JOURNAL ON IMAGING SCIENCES (2009)

Article Biotechnology & Applied Microbiology

Gene selection algorithm by combining reliefF and mRMR

Yi Zhang et al.

BMC GENOMICS (2008)

Article Biochemical Research Methods

Monte Carlo feature selection for supervised classification

Michal Draminski et al.

BIOINFORMATICS (2008)

Article Genetics & Heredity

Evolutionary history of 7SL RNA-derived SINEs in supraprimates

Jan Ole Kriegs et al.

TRENDS IN GENETICS (2007)

Article Biochemical Research Methods

RNAshapes: an integrated RNA analysis package based on abstract shapes

P Steffen et al.

BIOINFORMATICS (2006)

Article Computer Science, Artificial Intelligence

Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and min-redundancy

HC Peng et al.

IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2005)

Article Biochemistry & Molecular Biology

Specific roles of 5 ' RNA secondary structures in stabilizing transcripts in chloroplasts

L Suay et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Biochemistry & Molecular Biology

AU-rich elements and associated factors: are there unifying principles?

C Barreau et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Computer Science, Artificial Intelligence

The support vector machine under test

D Meyer et al.

NEUROCOMPUTING (2003)

Article Biochemistry & Molecular Biology

RNA binding properties of the AU-rich element-binding recombinant Nup475/TIS11/tristetraprolin protein

MT Worthington et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Computer Science, Artificial Intelligence

Random forests

L Breiman

MACHINE LEARNING (2001)