Journal
MOLECULAR BIOLOGY AND EVOLUTION
Volume 34, Issue 12, Pages 3299-3302Publisher
OXFORD UNIV PRESS
DOI: 10.1093/molbev/msx248
Keywords
Population Genetics Software; RADseq Analysis; SNPs; VCF; Coalescent Simulations
Funding
- Comissio Interdepartamental de Recerca \ Innovacio Tecnologica of Catalonia, Spain [2009SGR-1287, 2014SGR-1055]
- Ministerio de Economia y Competitividad, Spain [BFU2010-15484, CGL2013-45211, AGL2013-41834-R, AGL2016-78709-R, CGL2016-75255]
- Beatriu de Pinos Postdoctoral Fellowship (AGAUR) [2014 BP-B 00027]
- ICREA Academia (Generalitat de Catalunya)
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We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple sequence alignments. This major upgrade incorporates novel functionalities to analyze large data sets, such as those generated by high-throughput sequencing technologies. Among other features, DnaSP 6 implements: 1) modules for reading and analyzing data from genomic partitioning methods, such as RADseq or hybrid enrichment approaches, 2) faster methods scalable for high-throughput sequencing data, and 3) summary statistics for the analysis of multi-locus population genetics data. Furthermore, DnaSP 6 includes novel modules to perform single- and multi-locus coalescent simulations under a wide range of demographic scenarios. The DnaSP 6 program, with extensive documentation, is freely available at http://www.ub.edu/dnasp.
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