Related references
Note: Only part of the references are listed.Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora
Kim A. Steige et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
Taiji Kawakatsu et al.
CELL (2016)
On the origin and evolutionary consequences of gene body DNA methylation
Adam J. Bewick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana
Dazhe Meng et al.
PLOS GENETICS (2016)
CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon
Kyria Roessler et al.
PLOS ONE (2016)
Evolutionary patterns of genic DNA methylation vary across land plants
Shohei Takuno et al.
NATURE PLANTS (2016)
Methylome evolution in plants
Amaryllis Vidalis et al.
GENOME BIOLOGY (2016)
Widespread natural variation of DNA methylation within angiosperms
Chad E. Niederhuth et al.
GENOME BIOLOGY (2016)
Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation
Kaushik Panda et al.
GENOME BIOLOGY (2016)
DNA methylation pathways and their crosstalk with histone methylation
Jiamu Du et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
DNA Methylation within Transcribed Regions
Taiko K. To et al.
PLANT PHYSIOLOGY (2015)
CG gene body DNA methylation changes and evolution of duplicated genes in cassava
Haifeng Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
Adriaan van der Graaf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Epigenetics and plant genome evolution
Concepcion M. Diez et al.
CURRENT OPINION IN PLANT BIOLOGY (2014)
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
Marjori A. Matzke et al.
NATURE REVIEWS GENETICS (2014)
Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers
Guillaume Moissiard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
DNA methylation as a system of plant genomic immunity
M. Yvonne Kim et al.
TRENDS IN PLANT SCIENCE (2014)
Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
Danelle K. Seymour et al.
PLOS GENETICS (2014)
Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
Hume Stroud et al.
CELL (2013)
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
Jonathan I. Gent et al.
GENOME RESEARCH (2013)
Patterns of population epigenomic diversity
Robert J. Schmitz et al.
NATURE (2013)
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Tanja Slotte et al.
NATURE GENETICS (2013)
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
Shohei Takuno et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The correlation of genome size and DNA methylation rate in metazoans
Marcus Lechner et al.
THEORY IN BIOSCIENCES (2013)
Function and Evolution of DNA Methylation in Nasonia vitripennis
Xu Wang et al.
PLOS GENETICS (2013)
Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
Shohei Takuno et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
'Missing link' species Capsella orientalis and Capsella thracica elucidate evolution of model plant genus Capsella (Brassicaceae)
Herbert Hurka et al.
MOLECULAR ECOLOGY (2012)
Functions of DNA methylation: islands, start sites, gene bodies and beyond
Peter A. Jones
NATURE REVIEWS GENETICS (2012)
i-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets
Sebastian Proost et al.
NUCLEIC ACIDS RESEARCH (2012)
Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes
Devin Coleman-Derr et al.
PLOS GENETICS (2012)
The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates
Brandon Gaut et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 42 (2011)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Differentiation of epigenetic modifications between transposons and genes
Hidetoshi Saze et al.
CURRENT OPINION IN PLANT BIOLOGY (2011)
Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes
Liang Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Comparative Analyses of DNA Methylation and Sequence Evolution Using Nasonia Genomes
Jungsun Park et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
Sanjeev Shukla et al.
NATURE (2011)
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
Claude Becker et al.
NATURE (2011)
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Tina T. Hu et al.
NATURE GENETICS (2011)
Whole-genome sequencing of multiple Arabidopsis thaliana populations
Jun Cao et al.
NATURE GENETICS (2011)
Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
Robert J. Schmitz et al.
SCIENCE (2011)
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel et al.
NATURE (2010)
Conserved role of intragenic DNA methylation in regulating alternative promoters
Alika K. Maunakea et al.
NATURE (2010)
AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development
Fumio Matsuda et al.
PLANT PHYSIOLOGY (2010)
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
Mark A. Beilstein et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Conservation and divergence of methylation patterning in plants and animals
Suhua Feng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
Assaf Zemach et al.
SCIENCE (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
Asuka Miura et al.
EMBO JOURNAL (2009)
Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister et al.
NATURE (2009)
Recent speciation associated with the evolution of selfing in Capsella
John Paul Foxe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck
Ya-Long Guo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more
Francois Roudier et al.
TRENDS IN GENETICS (2009)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
Daniel Zilberman et al.
NATURE (2008)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn J. Cokus et al.
NATURE (2008)
Control of genic DNA methylation by a jmjC domain -: Containing protein in Arabidopsis thaliana
Hidetoshi Saze et al.
SCIENCE (2008)
Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays
Xu Zhang et al.
PLOS GENETICS (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
Epigenetic natural variation in Arabidopsis thaliana
Matthew W. Vaughn et al.
PLOS BIOLOGY (2007)
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
Daniel Zilberman et al.
NATURE GENETICS (2007)
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
Xiaoyu Zhang et al.
CELL (2006)
Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
MC Lorincz et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
Comparisons with Caenorhabditis (∼100 Mb) and Drosophila (∼175 Mb) using flow cytometry show genome size in Arabidopsis to be ∼157 Mb and thus ∼25 % larger than the Arabidopsis genome initiative estimate of ∼125 Mb
MD Bennett et al.
ANNALS OF BOTANY (2003)
Role of CG and non-CG methylation in immobilization of transposons in arabidopsis
M Kato et al.
CURRENT BIOLOGY (2003)
Robertson's Mutator transposons in A-thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1)
T Singer et al.
GENES & DEVELOPMENT (2001)