4.7 Article

An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads

Related references

Note: Only part of the references are listed.
Article Microbiology

Estimating Protistan Diversity Using High-Throughput Sequencing

Sarah K. Hu et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

Structure and function of the global ocean microbiome

Shinichi Sunagawa et al.

SCIENCE (2015)

Article Microbiology

Sewage Reflects the Microbiomes of Human Populations

Ryan J. Newton et al.

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Editorial Material Biology

The Earth Microbiome project: successes and aspirations

Jack A. Gilbert et al.

BMC BIOLOGY (2014)

Article Multidisciplinary Sciences

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

Kenan Hadziavdic et al.

PLOS ONE (2014)

Review Parasitology

What is the importance of zoonotic trichomonads for human health?

Julia M. Maritz et al.

TRENDS IN PARASITOLOGY (2014)

Article Microbiology

Bacterial communities on classroom surfaces vary with human contact

James F. Meadow et al.

MICROBIOME (2014)

Article Ecology

Trichomonas stableri n. sp., an agent of trichomonosis in Pacific Coast band-tailed pigeons (Patagioenas fasciata monilis)

Yvette A. Girard et al.

International Journal for Parasitology-Parasites and Wildlife (2014)

Article Biotechnology & Applied Microbiology

Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales

Orin C. Shanks et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Microbiology

Sewage reflects the distribution of human faecal Lachnospiraceae

Sandra L. McLellan et al.

ENVIRONMENTAL MICROBIOLOGY (2013)

Article Ecology

Global biogeography of highly diverse protistan communities in soil

Scott T. Bates et al.

ISME JOURNAL (2013)

Article Biochemical Research Methods

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

Nicholas A. Bokulich et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Pyrosequencing the Canine Faecal Microbiota: Breadth and Depth of Biodiversity

Daniel Hand et al.

PLOS ONE (2013)

Article Engineering, Environmental

Evaluation of molecular community analysis methods for discerning fecal sources and human waste

Yiping Cao et al.

WATER RESEARCH (2013)

Review Microbiology

Enteric Protozoa in the Developed World: a Public Health Perspective

Stephanie M. Fletcher et al.

CLINICAL MICROBIOLOGY REVIEWS (2012)

Article Microbiology

The Revised Classification of Eukaryotes

Sina M. Adl et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2012)

Article Multidisciplinary Sciences

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower et al.

NATURE (2012)

Article Multidisciplinary Sciences

Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing

Jan Pawlowski et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

J. Gregory Caporaso et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Microbiology

Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions

Laura Wegener Parfrey et al.

FRONTIERS IN MICROBIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Metagenomic biomarker discovery and explanation

Nicola Segata et al.

GENOME BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Identification of Ciliate Grazers of Autotrophic Bacteria in Ammonia-Oxidizing Activated Sludge by RNA Stable Isotope Probing

Ana Maria Moreno et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemical Research Methods

PyNAST: a flexible tool for aligning sequences to a template alignment

J. Gregory Caporaso et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Evolutionary Biology

Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

Laura Wegener Parfrey et al.

SYSTEMATIC BIOLOGY (2010)

Article Parasitology

MOLECULAR CHARACTERIZATION OF THE TRICHOMONAS GALLINAE MORPHOLOGIC COMPLEX IN THE UNITED STATES

Richard W. Gerhold et al.

JOURNAL OF PARASITOLOGY (2008)

Article Ecology

Pyrosequencing enumerates and contrasts soil microbial diversity

Luiz Fw Roesch et al.

ISME JOURNAL (2007)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Article Biochemical Research Methods

MRBAYES: Bayesian inference of phylogenetic trees

JP Huelsenbeck et al.

BIOINFORMATICS (2001)