4.5 Review

Standardization approaches in absolute quantitative proteomics with mass spectrometry

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Absolute venomics: Absolute quantification of intact venom proteins through elemental mass spectrometry

Francisco Calderon-Celis et al.

JOURNAL OF PROTEOMICS (2017)

Editorial Material Biochemical Research Methods

Heteroatom-tagged quantification of proteins via ICP-MS

Alfredo Sanz-Medel

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2016)

Review Medical Laboratory Technology

Challenges in biomarker discovery with MALDI-TOF MS

Joanna Hajduk et al.

CLINICA CHIMICA ACTA (2016)

Article Chemistry, Analytical

In vivo synthesized 34S enriched amino acid standards for species specific isotope dilution of proteins

Gerrit Hermann et al.

JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY (2016)

Article Biochemical Research Methods

RePLiCal: A QconCAT Protein for Retention Time Standardization in Proteomics Studies

Stephen W. Holman et al.

JOURNAL OF PROTEOME RESEARCH (2016)

Article Biochemical Research Methods

CONSTANd : A Normalization Method for Isobaric Labeled Spectra by Constrained Optimization

Evelyne Maes et al.

MOLECULAR & CELLULAR PROTEOMICS (2016)

Article Biochemical Research Methods

Targeted absolute quantitative proteomics with SILAC internal standards and unlabeled full-length protein calibrators (TAQSI)

Xinwen Wang et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2016)

Article Chemistry, Multidisciplinary

Profiling changes to natively-bound metals during Caenorhabditis elegans development

Dominic J. Hare et al.

RSC ADVANCES (2016)

Review Spectroscopy

The use of elemental mass spectrometry in phosphoproteomic applications

Evelyne Maes et al.

MASS SPECTROMETRY REVIEWS (2016)

Article Physics, Atomic, Molecular & Chemical

Ten years of QconCATs: Application of multiplexed quantification to small medically relevant proteomes

Brahim Achour et al.

INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2015)

Article Biochemical Research Methods

Determination of Cystatin C in human serum by isotope dilution mass spectrometry using mass overlapping peptides

Ana Gonzalez-Antuna et al.

JOURNAL OF PROTEOMICS (2015)

Article Chemistry, Analytical

Ion Coalescence of Neutron Encoded TMT 10-Plex Reporter Ions

Thilo Werner et al.

ANALYTICAL CHEMISTRY (2014)

Article Chemistry, Multidisciplinary

From the Human Genome to the Human Proteome

Javier Munoz et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)

Editorial Material Biochemical Research Methods

Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

Emily S. Boja et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Review Biochemical Research Methods

MALDI imaging mass spectrometry: Spatial molecular analysis to enable a new age of discovery

Megan M. Gessel et al.

JOURNAL OF PROTEOMICS (2014)

Article Biochemical Research Methods

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Juergen Cox et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Review Spectroscopy

Inductively coupled plasma mass spectrometry-based immunoassay: A review

Rui Liu et al.

MASS SPECTROMETRY REVIEWS (2014)

Article Multidisciplinary Sciences

A draft map of the human proteome

Min-Sik Kim et al.

NATURE (2014)

Article Multidisciplinary Sciences

Mass-spectrometry-based draft of the human proteome

Mathias Wilhelm et al.

NATURE (2014)

Review Biochemical Research Methods

Top-down proteomics in health and disease: Challenges and opportunities

Zachery R. Gregorich et al.

PROTEOMICS (2014)

Review Chemistry, Multidisciplinary

Protein Analysis by Shotgun/Bottom-up Proteomics

Yaoyang Zhang et al.

CHEMICAL REVIEWS (2013)

Editorial Material Biochemical Research Methods

Western Blots versus Selected Reaction Monitoring Assays: Time to Turn the Tables?

Ruedi Aebersold et al.

MOLECULAR & CELLULAR PROTEOMICS (2013)

Review Biochemical Research Methods

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

Marcus Bantscheff et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2012)

Review Biochemical Research Methods

An insight into iTRAQ: where do we stand now?

Caroline Evans et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2012)

Review Chemistry, Analytical

Advancements in Top-Down Proteomics

Hu Zhou et al.

ANALYTICAL CHEMISTRY (2012)

Article Chemistry, Analytical

Triple Quad ICPMS (ICPQQQ) as a New Tool for Absolute Quantitative Proteomics and Phosphoproteomics

Silvia Diez Fernandez et al.

ANALYTICAL CHEMISTRY (2012)

Article Chemistry, Analytical

Increasing the Multiplexing Capacity of TMTs Using Reporter Ion Isotopologues with Isobaric Masses

Graeme C. McAlister et al.

ANALYTICAL CHEMISTRY (2012)

Article Chemistry, Analytical

Carbonyl-Reactive Tandem Mass Tags for the Proteome-Wide Quantification of N-Linked Glycans

Hannes Hahne et al.

ANALYTICAL CHEMISTRY (2012)

Article Biophysics

Elemental and molecular detection for Quantum Dots-based immunoassays: A critical appraisal

Antonio R. Montoro Bustos et al.

BIOSENSORS & BIOELECTRONICS (2012)

Article Chemistry, Analytical

Comparison of different methods for the absolute quantification of harbour seal transferrin glycoforms using HPLC-ICP-MS

Mechthild Grebe et al.

JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY (2012)

Article Biochemical Research Methods

Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli

L. Arike et al.

JOURNAL OF PROTEOMICS (2012)

Article Biochemical Research Methods

Highly multiplexed targeted proteomics using precise control of peptide retention time

Sebastien Gallien et al.

PROTEOMICS (2012)

Article Biochemical Research Methods

Using iRT, a normalized retention time for more targeted measurement of peptides

Claudia Escher et al.

PROTEOMICS (2012)

Article Chemistry, Analytical

ICP-MS for absolute quantification of proteins for heteroatom-tagged, targeted proteomics

Alfredo Sanz-Medel et al.

TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2012)

Editorial Material Medical Laboratory Technology

Painting a Moving Picture: Large-Scale Proteomics Efforts and Their Potential for Changing Patient Care

Andrew N. Hoofnagle et al.

CLINICAL CHEMISTRY (2011)

Article Chemistry, Analytical

Magnetic quantitative immunoanalysis of carcinoembryonic antigen by ICP-MS with mercury labels

Hanyong Peng et al.

JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY (2011)

Article Biochemical Research Methods

CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches

Claire E. Eyers et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Multidisciplinary Sciences

Mapping intact protein isoforms in discovery mode using top-down proteomics

John C. Tran et al.

NATURE (2011)

Article Multidisciplinary Sciences

Global quantification of mammalian gene expression control

Bjoern Schwanhaeusser et al.

NATURE (2011)

Review Biochemical Research Methods

Less label, more free: Approaches in label-free quantitative mass spectrometry

Karlie A. Neilson et al.

PROTEOMICS (2011)

Article Medical Laboratory Technology

Protein-Based Multiplex Assays: Mock Presubmissions to the US Food and Drug Administration

Fred E. Regnier et al.

CLINICAL CHEMISTRY (2010)

Editorial Material Medical Laboratory Technology

Quantitative Clinical Proteomics by Liquid Chromatography-Tandem Mass Spectrometry: Assessing the Platform

Andrew N. Hoofnagle

CLINICAL CHEMISTRY (2010)

Review Spectroscopy

ICP-MS-BASED STRATEGIES FOR PROTEIN QUANTIFICATION

Meng Wang et al.

MASS SPECTROMETRY REVIEWS (2010)

Article Biotechnology & Applied Microbiology

Proteomics: a pragmatic perspective

Parag Mallick et al.

NATURE BIOTECHNOLOGY (2010)

Review Chemistry, Analytical

Metal labeling for quantitative protein and proteome analysis using inductively-coupled plasma mass spectrometry

Andreas Tholey et al.

TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2010)

Article Chemistry, Analytical

Absolute Peptide Quantification by Lutetium Labeling and NanoHPLC-ICPMS with Isotope Dilution Analysis

Christina Rappel et al.

ANALYTICAL CHEMISTRY (2009)

Article Engineering, Biomedical

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

John R. Yates et al.

Annual Review of Biomedical Engineering (2009)

Editorial Material Medical Laboratory Technology

Protein Quantification by Mass Spectrometry: Is It Ready for Prime Time?

Eleftherios P. Diamandis

CLINICAL CHEMISTRY (2009)

Review Biochemical Research Methods

The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry

Andrew N. Hoofnagle et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2009)

Article Biochemical Research Methods

Phosphorus-Based Absolutely Quantified Standard Peptides for Quantitative Proteomics

Nico Zinn et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Review Biochemical Research Methods

Mass Spectrometry Based Targeted Protein Quantification: Methods and Applications

Sheng Pan et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Review Biochemical Research Methods

MALDI Imaging Mass Spectrometry

Julien Franck et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Multidisciplinary Sciences

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

Johan Malmstroem et al.

NATURE (2009)

Article Biochemical Research Methods

Quantitative interaction proteomics using mass spectrometry

Alexander Wepf et al.

NATURE METHODS (2009)

Article Biochemical Research Methods

Amine-reactive isobaric tagging reagents: Requirements for absolute quantification of proteins and peptides

M. Quaglia et al.

ANALYTICAL BIOCHEMISTRY (2008)

Article Chemistry, Analytical

HPLC-ICPMS and Stable Isotope-Labeled Approaches To Assess Quantitatively Ti(IV) Uptake by Transferrin in Human Blood Serum

Alejandro Sarmiento-Gonzalez et al.

ANALYTICAL CHEMISTRY (2008)

Review Biochemistry & Molecular Biology

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

Eric W. Deutsch et al.

EMBO REPORTS (2008)

Article Biochemical Research Methods

Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level

Stefan Hanke et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Counting sulfhydryls and disulfide bonds in peptides and proteins using mercurial ions as an MS-tag

Yifei Guo et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2008)

Letter Biochemical Research Methods

A database of mass spectrometric assays for the yeast proteome

Paola Picotti et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics

Hamid Mirzaei et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Review Biochemical Research Methods

Elemental mass spectrometry for quantitative proteomics

Alfredo Sanz-Medel et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2008)

Article Biochemical Research Methods

Isotopic labelling of peptides and isotope ratio analysis using LC-ICP-MS: a preliminary study

Pritesh Patel et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2008)

Article Biochemical Research Methods

Isotope-labeled protein standards

Virginie Brun et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Chemistry, Analytical

Pseudo internal standard approach for label-free quantitative proteomics

Tsuyoshi Tabata et al.

ANALYTICAL CHEMISTRY (2007)

Article Biochemical Research Methods

A metal-coded affinity tag approach to quantitative proteomics

Robert Ahrends et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

MALDI imaging mass spectrometry: molecular snapshots of biochemical systems

Dale S. Cornett et al.

NATURE METHODS (2007)

Article Biochemical Research Methods

Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research

Sebastian Wiese et al.

PROTEOMICS (2007)

Article Biotechnology & Applied Microbiology

eComputational prediction of proteotypic peptides for quantitative proteomics

Parag Mallick et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemical Research Methods

Solid-phase peptide synthesis: from standard procedures to the synthesis of difficult sequences

Irene Coin et al.

NATURE PROTOCOLS (2007)

Article Chemistry, Multidisciplinary

Absolute and accurate quantification of protein phosphorylation by using an elemental phosphorus standard and element mass spectrometry

A. Pereira Navaza et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2007)

Article Chemistry, Multidisciplinary

Polymer-based elemental tags for sensitive Bioassays

Xudong Lou et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2007)

Review Medical Laboratory Technology

The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome

Glen L. Hortin

CLINICAL CHEMISTRY (2006)

Review Biochemistry & Molecular Biology

Methods and Protocols of modern solid phase peptide synthesis

M Amblard et al.

MOLECULAR BIOTECHNOLOGY (2006)

Review Multidisciplinary Sciences

Review - Mass spectrometry and protein analysis

B Domon et al.

SCIENCE (2006)

Article Biochemical Research Methods

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

L Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Review Spectroscopy

Mass spectrometry in bioinorganic analytical chemistry

R Lobinski et al.

MASS SPECTROMETRY REVIEWS (2006)

Article Biochemical Research Methods

A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)

Shao-En Ong et al.

NATURE PROTOCOLS (2006)

Article Biochemical Research Methods

Absolute quantification of proteins by LCMSE - A virtue of parallel MS acquisition

JC Silva et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Biochemistry & Molecular Biology

The PeptideAtlas project

Frank Desiere et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Biochemistry & Molecular Biology

Mass spectrometry-based proteomics turns quantitative

SE Ong et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Biochemical Research Methods

PRIDE: The proteomics identifications database

L Martens et al.

PROTEOMICS (2005)

Review Spectroscopy

Isotope dilution analysis for elemental speciation:: A tutorial review

P Rodríguez-González et al.

SPECTROCHIMICA ACTA PART B-ATOMIC SPECTROSCOPY (2005)

Review Biochemical Research Methods

Absolute quantification strategies in proteomics based on mass spectrometry

M Brönstrup

EXPERT REVIEW OF PROTEOMICS (2004)

Article Biochemical Research Methods

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

PL Ross et al.

MOLECULAR & CELLULAR PROTEOMICS (2004)

Article Multidisciplinary Sciences

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

SA Gerber et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Multidisciplinary Sciences

Mass spectrometry-based proteomics

R Aebersold et al.

NATURE (2003)

Review Genetics & Heredity

Protein microarrays and proteomics

G MacBeath

NATURE GENETICS (2002)

Review Biochemical Research Methods

The human plasma proteome - History, character, and diagnostic prospects

NL Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2002)

Article Biochemical Research Methods

Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry

D Chelius et al.

JOURNAL OF PROTEOME RESEARCH (2002)

Article Biochemical Research Methods

Minimizing resolution of isotopically coded peptides in comparative proteomics

RJ Zhang et al.

JOURNAL OF PROTEOME RESEARCH (2002)

Article Chemistry, Analytical

Fractionation of isotopically labeled peptides in quantitative proteomics

RJ Zhang et al.

ANALYTICAL CHEMISTRY (2001)

Article Multidisciplinary Sciences

Lethality and centrality in protein networks

H Jeong et al.

NATURE (2001)

Review Multidisciplinary Sciences

The sequence of the human genome

JC Venter et al.

SCIENCE (2001)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)