4.2 Article

CRISPR-Cas orthologues and variants: optimizing the repertoire, specificity and delivery of genome engineering tools

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

In vivo high-throughput profiling of CRISPR-Cpf1 activity

Hui K. Kim et al.

NATURE METHODS (2017)

Article Genetics & Heredity

Highly Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection

Dawn E. Watkins-Chow et al.

G3-GENES GENOMES GENETICS (2017)

Review Microbiology

Diversity and evolution of class 2 CRISPR-Cas systems

Sergey Shmakov et al.

NATURE REVIEWS MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

Nucleic acid detection with CRISPR-Cas13a/C2c2

Jonathan S. Gootenberg et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni

Eunji Kim et al.

NATURE COMMUNICATIONS (2017)

Article Genetics & Heredity

Microhomology-mediated end joining induces hypermutagenesis at breakpoint junctions

Supriya Sinha et al.

PLOS GENETICS (2017)

Article Biochemistry & Molecular Biology

Two Distant Catalytic Sites Are Responsible for C2c2 RNase Activities

Liang Liu et al.

Review Cell Biology

Beyond editing: repurposing CRISPR-Cas9 for precision genome regulation and interrogation

Antonia A. Dominguez et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)

Article Multidisciplinary Sciences

Rationally engineered Cas9 nucleases with improved specificity

Ian M. Slaymaker et al.

SCIENCE (2016)

Article Biochemistry & Molecular Biology

Zygote-mediated generation of genome-modified mice using Streptococcus thermophilus 1-derived CRISPR/Cas system

Wataru Fujii et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2016)

Article Biotechnology & Applied Microbiology

Efficient generation of Rosa26 knock-in mice using CRISPR/Cas9 in C57BL/6 zygotes

Van Trung Chu et al.

BMC BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA

Takashi Yamano et al.

Article Biochemistry & Molecular Biology

Structure and Engineering of Francisella novicida Cas9

Hisato Hirano et al.

Article Biochemistry & Molecular Biology

Naturally Occurring Off-Switches for CRISPR-Cas9

April Pawluk et al.

Article Biochemistry & Molecular Biology

Excision of HIV-1 DNA by gene editing: a proof-of-concept in vivo study

R. Kaminski et al.

GENE THERAPY (2016)

Review Biochemistry & Molecular Biology

DNA Sequence Alignment during Homologous Recombination

Eric C. Greene

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Structural Plasticity of PAM Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9

Carolin Anders et al.

MOLECULAR CELL (2016)

Article Biochemistry & Molecular Biology

Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9

Seiichi Hirano et al.

MOLECULAR CELL (2016)

Article Biotechnology & Applied Microbiology

The Neisseria meningitidis CRISPR-Cas9 System Enables Specific Genome Editing in Mammalian Cells

Ciaran M. Lee et al.

MOLECULAR THERAPY (2016)

Article Biotechnology & Applied Microbiology

Streptococcus thermophilus CRISPR-Cas9 Systems Enable Specific Editing of the Human Genome

Maximilian Mueller et al.

MOLECULAR THERAPY (2016)

Article Multidisciplinary Sciences

The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA

Ines Fonfara et al.

NATURE (2016)

Article Multidisciplinary Sciences

The crystal structure of Cpf1 in complex with CRISPR RNA

De Dong et al.

NATURE (2016)

Article Multidisciplinary Sciences

High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects

Benjamin P. Kleinstiver et al.

NATURE (2016)

Article Multidisciplinary Sciences

Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection

Alexandra East-Seletsky et al.

NATURE (2016)

Letter Biotechnology & Applied Microbiology

Generation of knockout mice by Cpf1-mediated gene targeting

Yongsub Kim et al.

NATURE BIOTECHNOLOGY (2016)

Letter Biotechnology & Applied Microbiology

Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins

Junho K. Hur et al.

NATURE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA

Christopher D. Richardson et al.

NATURE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

Daesik Kim et al.

NATURE BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

Genome editing using CRISPR-Cas9 to create the HPFH genotype in HSPCs: An approach for treating sickle cell disease and β-thalassemia

Lin Ye et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage

Fuguo Jiang et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

Omar O. Abudayyeh et al.

SCIENCE (2016)

Article Cell & Tissue Engineering

Generation and validation of PAX7 reporter lines from human iPS cells using CRISPR/Cas9 technology

Jianbo Wu et al.

STEM CELL RESEARCH (2016)

Article Multidisciplinary Sciences

Systematic quantification of HDR and NHEJ reveals effects of locus, nuclease, and cell type on genome-editing

Yuichiro Miyaoka et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

Efficient Production of Gene-Modified Mice using Staphylococcus aureus Cas9

Xiya Zhang et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

Improved bi-allelic modification of a transcriptionally silent locus in patient-derived iPSC by Cas9 nickase

Reto Eggenschwiler et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

CRISPR RNA-guided FokI nucleases repair a PAH variant in a phenylketonuria model

Yi Pan et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

Crystal Structure of Staphylococcus aureus Cas9

Hiroshi Nishimasu et al.

Article Biochemistry & Molecular Biology

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

Bernd Zetsche et al.

Article Biotechnology & Applied Microbiology

Fanconi Anemia Gene Editing by the CRISPR/Cas9 System

Mark J. Osborn et al.

HUMAN GENE THERAPY (2015)

Article Biochemistry & Molecular Biology

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems

Sergey Shmakov et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

Engineered CRISPR-Cas9 nucleases with altered PAM specificities

Benjamin P. Kleinstiver et al.

NATURE (2015)

Review Multidisciplinary Sciences

Gene therapy returns to centre stage

Luigi Naldini

NATURE (2015)

Article Multidisciplinary Sciences

In vivo genome editing using Staphylococcus aureus Cas9

F. Ann Ran et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition

Benjamin P. Kleinstiver et al.

NATURE BIOTECHNOLOGY (2015)

Letter Biotechnology & Applied Microbiology

A split-Cas9 architecture for inducible genome editing and transcription modulation

Bernd Zetsche et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

DNA-binding-domain fusions enhance the targeting range and precision of Cas9

Mehmet Fatih Bolukbasi et al.

NATURE METHODS (2015)

Letter Biochemical Research Methods

Off-target mutations are rare in Cas9-modified mice

Vivek Iyer et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells

Daesik Kim et al.

NATURE METHODS (2015)

Review Microbiology

An updated evolutionary classification of CRISPR-Cas systems

Kira S. Makarova et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Development of an intein-mediated split-Cas9 system for gene therapy

Dong-Jiunn Jeffery Truong et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Multicolor CRISPR labeling of chromosomal loci in human cells

Hanhui Ma et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Rational design of a split-Cas9 enzyme complex

Addison V. Wright et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

A Cas9-guide RNA complex preorganized for target DNA recognition

Fuguo Jiang et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Generation of mutant mice via the CRISPR/Cas9 system using FokI-dCas9

Satoshi Hara et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

Efficient genome engineering in eukaryotes using Cas9 from Streptococcus thermophilus

Kun Xu et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2015)

Article Biochemistry & Molecular Biology

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA

Hiroshi Nishimasu et al.

Article Developmental Biology

Somatic mosaicism and allele complexity induced by CRISPR/Cas9 RNA injections in mouse zygotes

Shuo-Ting Yen et al.

DEVELOPMENTAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases

Seung Woo Cho et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

Chromosomal Translocations in Human Cells Are Generated by Canonical Nonhomologous End-Joining

Hind Ghezraoui et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease

Carolin Anders et al.

NATURE (2014)

Article Biotechnology & Applied Microbiology

Improving CRISPR-Cas nuclease specificity using truncated guide RNAs

Yanfang Fu et al.

NATURE BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Dimeric CRISPR RNA-guided Fokl nucleases for highly specific genome editing

Shengdar Q. Tsai et al.

NATURE BIOTECHNOLOGY (2014)

Review Biotechnology & Applied Microbiology

CRISPR-Cas systems for editing, regulating and targeting genomes

Jeffry D. Sander et al.

NATURE BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Fusion of catalytically inactive Cas9 to Fokl nuclease improves the specificity of genome modification

John P. Guilinger et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects

Bin Shen et al.

NATURE METHODS (2014)

Article Multidisciplinary Sciences

Homology-directed repair of DNA nicks via pathways distinct from canonical double-strand break repair

Luther Davis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation

Martin Jinek et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Comparison of non-canonical PAMs for CRISPR/Cas9-mediated DNA cleavage in human cells

Yilan Zhang et al.

SCIENTIFIC REPORTS (2014)

Review Genetics & Heredity

Is Non-Homologous End-Joining Really an Inherently Error-Prone Process?

Mireille Betermier et al.

PLOS GENETICS (2014)

Article Biochemistry & Molecular Biology

Conditional targeting of Ispd using paired Cas9 nickase and a single DNA template in mice

Angus Yiu-fai Lee et al.

FEBS OPEN BIO (2014)

Article Biochemistry & Molecular Biology

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

F. Ann Ran et al.

Article Biochemistry & Molecular Biology

Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis

Yan Zhang et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

A CRISPR/Cas system mediates bacterial innate immune evasion and virulence

Timothy R. Sampson et al.

NATURE (2013)

Article Biotechnology & Applied Microbiology

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering

Prashant Mali et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease

Seung Woo Cho et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells

Yanfang Fu et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Orthogonal Cas9 proteins for RNA-guided gene regulation and editing

Kevin M. Esvelt et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity

Thomas J. Cradick et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Mammalian Base Excision Repair: the Forgotten Archangel

Grigory L. Dianov et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis

Zhonggang Hou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

RNA-Guided Human Genome Engineering via Cas9

Prashant Mali et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biology

RNA-programmed genome editing in human cells

Martin Jinek et al.

ELIFE (2013)

Article Multidisciplinary Sciences

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

Giedrius Gasiunas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

Martin Jinek et al.

SCIENCE (2012)

Article Multidisciplinary Sciences

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

Elitza Deltcheva et al.

NATURE (2011)

Review Biochemistry & Molecular Biology

The Mechanism of Double-Strand DNA Break Repair by the Nonhomologous DNA End-Joining Pathway

Michael R. Lieber

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)

Article Multidisciplinary Sciences

CRISPR provides acquired resistance against viruses in prokaryotes

Rodolphe Barrangou et al.

SCIENCE (2007)