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T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

Journal

MICROBIOLOGY RESOURCE ANNOUNCEMENTS
Volume 8, Issue 29, Pages -

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/MRA.00328-19

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Funding

  1. National Science Foundation (NSF) Genealogy of Life (GoLife) program [DEB-1541418, DEB-1541496, DEB-1541548]
  2. National Institutes of Health (NIH) [5 R01 GM1264635]
  3. NSF [DBI-1759844]
  4. U.S. National Science Foundation [TG-DEB090011]

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The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.

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